Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,905,692 – 6,905,787 |
Length | 95 |
Max. P | 0.757432 |
Location | 6,905,692 – 6,905,787 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -14.05 |
Consensus MFE | -8.93 |
Energy contribution | -8.40 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.39 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6905692 95 - 27905053 ACCGUU-------GUUCCACUAAUUG--CUUCACUUUUUUAUUGCACUUUUCUA--AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUACAC ...(.(-------(((((.(.....)--....((((((..(((((.........--..)))))..))))))...)))))).)....--.................... ( -11.10) >DroSec_CAF1 54273 95 - 1 ACCGUU-------GUCCCACUAAUUG--CUUCGCUUUUUUAUUGCACUUUUCUA--AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUUCAC ......-------.............--....((((((..(((((.........--..)))))..))))))...(((((((.....--..)))))))........... ( -10.20) >DroSim_CAF1 54680 95 - 1 ACCGUU-------GUCCCACUAAUUG--CUUCGCUUUUUUAUUGCACUUUUCUA--AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUACAC ......-------.............--....((((((..(((((.........--..)))))..))))))...(((((((.....--..)))))))........... ( -10.20) >DroEre_CAF1 55359 102 - 1 UCCGUUUGUUUUUUCCCCACUAAUUG--CUUUACCUUUUUAUUGCACUUUUCUA--AAGCAAUGCCAGAGUUUUGGAAUAUCUUUA--AAAUAUUCCUCUUAUUACAC ......................((((--(((((...................))--)))))))....(((....(((((((.....--..))))))).)))....... ( -12.61) >DroYak_CAF1 55513 95 - 1 ACUGUU-------UACCCACUAAUUG--CUUUACUUUUUUAUUGCACUUUUCUA--GAGCAAUGCAAGAGUUUUGGAAUAUCUUAA--AAAUAUUCCUCUUAUUACAC ......-------.............--....((((((.((((((.((.....)--).)))))).))))))...(((((((.....--..)))))))........... ( -16.20) >DroAna_CAF1 52211 98 - 1 ACACUU-------C--AUUUUAAUUGAACUUCAGUGCUUUAU-GUUCUUCUCUAUAGAGGAGAGCAGCAUGGUUGGAAUAUCUAAAUGGAAUAUUCCCUUUAUUACAC ......-------.--..........((((...(((((....-(((((((((....))))))))))))))))))(((((((((....)).)))))))........... ( -24.00) >consensus ACCGUU_______GUCCCACUAAUUG__CUUCACUUUUUUAUUGCACUUUUCUA__AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA__AAAUAUUCCUCUUAUUACAC ................................((((((..(((((.............)))))..))))))...(((((((.........)))))))........... ( -8.93 = -8.40 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:50 2006