Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,903,165 – 6,903,264 |
Length | 99 |
Max. P | 0.595505 |
Location | 6,903,165 – 6,903,264 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.55 |
Mean single sequence MFE | -20.91 |
Consensus MFE | -18.15 |
Energy contribution | -18.03 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.25 |
Structure conservation index | 0.87 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6903165 99 - 27905053 AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCAAAAGCCAUAAA ...((((((((.((((....(((((......))))).....)))).....))))))))..(.(((.........))))....(((((....)))))... ( -19.10) >DroSec_CAF1 51678 99 - 1 AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCAAAAGCCAUAAA ...((((((((.((((....(((((......))))).....)))).....))))))))..(.(((.........))))....(((((....)))))... ( -19.10) >DroSim_CAF1 52080 99 - 1 AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCCAAAGCCAUAAA ...((((((((.((((....(((((......))))).....)))).....))))))))..(.(((.........))))....(((((....)))))... ( -18.60) >DroEre_CAF1 52789 99 - 1 AAUAUCGAGAAGAGGCAUUUGCAUACUCUCCUAUGCUCGGCGUCUCUUUCUGCUCCUUUAGCUGCCUCUCUCUCGCACACACAUGGCCAAAGCCAUAAA .....((((((((((((...(((((......)))))..((.((........)).))......))))))).))))).......(((((....)))))... ( -29.30) >DroYak_CAF1 52898 99 - 1 AAUAUCGAGAACACGCAUUUGCAUACUCUCCUAUGUGCGGCGUCUCUUUCUUCUCCGUUAGCUGCCUCUCUUUCGCACACACAUGGCCGCAGCCAUAAA ......((((...(((....(((((......))))))))...))))..........(((.((.(((..................))).)))))...... ( -18.47) >consensus AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCCAAAGCCAUAAA .....(((((..((((....(((((......)))))..(((...................)))))))...))))).......(((((....)))))... (-18.15 = -18.03 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:49 2006