Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,897,229 – 6,897,326 |
Length | 97 |
Max. P | 0.533005 |
Location | 6,897,229 – 6,897,326 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -27.81 |
Consensus MFE | -15.80 |
Energy contribution | -16.55 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.10 |
Mean z-score | -1.77 |
Structure conservation index | 0.57 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6897229 97 + 27905053 GG-----GAUUCUGGU--CCUGGUGCCCGUUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA ((-----(((....))--)))(((((((((((((.((.....((((----(.....((-(-......))).......)))))....)).)))))))))))))........ ( -31.70) >DroSec_CAF1 45859 102 + 1 GGGCCCGGAUUCUGGU--CAUGGUGCCCGUUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA ((((((((((....))--).))).((((((((((.((.....((((----(.....((-(-......))).......)))))....)).))))))))))))))....... ( -31.90) >DroEre_CAF1 46819 102 + 1 GGGUCCGGAUUCUGGU--CCUGGUGCCCAUUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA (((.((((...)))).--)))(((((((((((((.((.....((((----(.....((-(-......))).......)))))....)).)))))))))))))........ ( -35.10) >DroWil_CAF1 45433 90 + 1 ---------------G--CCUUUUGCCU--UUUUCUUUCUUUCAGCCACAAGACAACU-UCUGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUGAC ---------------.--......((((--.((((..((((........)))).....-..(((((..(((.......)))...))))).)))).))))........... ( -14.40) >DroYak_CAF1 46901 102 + 1 GGGUCCGGAUUCUGGU--CCUGGUGCCCGCUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA (((.((((...)))).--)))((((((((.....(.(((.....((----(((....)-)-)))...))).).(((((((......))))))).))))))))........ ( -33.30) >DroAna_CAF1 44071 87 + 1 -------GCUUCCGGUGCCUUGGUGC-----------UUCUUUUCC----AGACAACUUU-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGACGCCCACAUAAA -------......((.((((..((((-----------.........----..........-.))))..))((((((((((......))))).)))))..))))....... ( -20.45) >consensus GG_____GAUUCUGGU__CCUGGUGCCCGUUUUAGACUCCUUUGGC____AGACAACU_U_UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA .....................(((((((...........(((..((....((....))....))...)))...(((((((......)))))))..)))))))........ (-15.80 = -16.55 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:46 2006