Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,890,653 – 6,890,753 |
Length | 100 |
Max. P | 0.511839 |
Location | 6,890,653 – 6,890,753 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.70 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -18.88 |
Energy contribution | -20.32 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.24 |
Mean z-score | -2.30 |
Structure conservation index | 0.57 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6890653 100 - 27905053 ACGGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGGUGCGUGUACUUCAUCGCCUUCAAAGGGC-AAAUCGCAGCAGGUGGCGA ...((((.(((((((......((((((((.((.---...(.((((.....)))).)....)).))))))))((((.....))))-.))))))).....)))).. ( -39.80) >DroSec_CAF1 44910 100 - 1 ACGGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUUAUCGCCUUCAAAGGGC-GAAUCGCAGCAGGUGGCGA ...((((.((((((((.....((((((((.((.---.....((((.....))))......)).))))))))((((.....))))-)))))))).....)))).. ( -38.80) >DroSim_CAF1 45220 100 - 1 ACGGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUUAUCGCCUUCAAAGGGC-GAAUCGCAGCAGGUGGCGA ...((((.((((((((.....((((((((.((.---.....((((.....))))......)).))))))))((((.....))))-)))))))).....)))).. ( -38.80) >DroEre_CAF1 45873 89 - 1 ACAGCCAAUGCGAAUCUCGAUGAUGAAGUUCAA---AAUAAGGCUGAUUAAGCUGCUGCGU-----------CCUUCAAAGGGC-AAAUCGCAGCAGGUGGCGA .(((((....((.....)).(((......))).---.....)))))......(((((((((-----------(((....)))))-.....)))))))....... ( -27.60) >DroYak_CAF1 45954 100 - 1 ACAGCCAAUGUGAAUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUCAUUGCCUUCAAAGGGC-AAGUCGCAGCAGGUGGCGA .(((((....((((..((......))..)))).---.....)))))......((((((((.........((((((.....))))-))..))))))))....... ( -35.20) >DroAna_CAF1 43111 101 - 1 ACAACCAAUGGUGUCCUUGAUGAUAAAGUUGAAAUAAAUAUUACUGAUGAAGGUGGCGCGUGUGUUCCAUAUCCUUCUACAGGCUAUAUCGCAGCAGGUG---A ...(((.....((((......))))..((((..(((.......(((..((((((((.((....)).)))...)))))..)))....)))..)))).))).---. ( -19.60) >consensus ACAGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA___AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUCAUCGCCUUCAAAGGGC_AAAUCGCAGCAGGUGGCGA .(((((....(((((.....(((......)))....))))))))))......((((((((...........((((.....)))).....))))))))....... (-18.88 = -20.32 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:45 2006