Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,887,790 – 6,887,884 |
Length | 94 |
Max. P | 0.539847 |
Location | 6,887,790 – 6,887,884 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 77.58 |
Mean single sequence MFE | -10.42 |
Consensus MFE | -8.32 |
Energy contribution | -8.27 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -0.79 |
Structure conservation index | 0.80 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6887790 94 - 27905053 AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCGCAUUCCCCGAUCCCCACAUUCCACACCCA .(((..............((....((....)).-...))((((((.........))))))....)))............................ ( -12.10) >DroSec_CAF1 41988 94 - 1 AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCACAUCCCCCGAUCUCCACAUUCCACAUCCA ((.((......)).)).(((.............-.....((((((.........)))))).......(((....)))..)))............. ( -9.40) >DroSim_CAF1 42288 94 - 1 AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCACAUCCCCCGAUCCCCACAUUCCACAUCCA ((.((......)).)).(((.............-.....((((((.........)))))).......(((....)))..)))............. ( -9.60) >DroEre_CAF1 42856 74 - 1 AGCGAUUUUUUUCACUCCGGCUUUAUUUAAAUU-UCUCUGCCUGUUCCGUGACCACAGGCAUUCCACAUC--------------------GCCCA .(((((.....((.....)).............-....(((((((.........)))))))......)))--------------------))... ( -12.30) >DroYak_CAF1 42871 86 - 1 AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCUGCCUGUUCUGUGACCACAGGCAUUCCGCAUUCC--------CACCUCCCCCAUCCA .((((......))....................-....(((((((.........)))))))....)).....--------............... ( -11.90) >DroPer_CAF1 59637 84 - 1 AGC--UUUUUUCCACUUU-GCUUUAUUUAAAUUUUCUUUGCCUCUGCAUUUACCGCAGGCAUUU-------UCUGAUCCGCACACAC-CCAUCGA (((--.............-)))................(((((..((.......)))))))...-------................-....... ( -7.22) >consensus AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU_UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCACAUCCCCCGAUCCCCACAUUCCACAUCCA .......................................((((((.........))))))................................... ( -8.32 = -8.27 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:42 2006