Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,886,672 – 6,886,780 |
Length | 108 |
Max. P | 0.888592 |
Location | 6,886,672 – 6,886,780 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 97.97 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -15.40 |
Energy contribution | -15.16 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.29 |
Structure conservation index | 0.81 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6886672 108 - 27905053 CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU-CGCUCCCUACAAAUUUUCA ...(((..((((((((...)))).))))..))).................................((((((((((.........))))-))))))............. ( -19.60) >DroSec_CAF1 40875 108 - 1 CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU-CGCUCCCUGCAAAUUUUCA ...(((((((...........(((((((....(((.....))).....)))))))...........((((((((((.........))))-))))))..))))...))). ( -22.70) >DroSim_CAF1 41171 108 - 1 CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU-CGCUCCCUACAAAUUUUCA ...(((..((((((((...)))).))))..))).................................((((((((((.........))))-))))))............. ( -19.60) >DroEre_CAF1 41768 107 - 1 CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUCCUUUUACUUCUACUUCAAGAGCGGUU-UCCGUCUUUGAAU-CGCUCCCUACAAAUUUUCA ...(((..((((((((...)))).))))..)))..................................((((((((-(........))))-))))).............. ( -16.30) >DroYak_CAF1 41705 109 - 1 CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAAGAGCGGUUUUCCGUCUUUGAAUCCGCUCCCUACAAAUUUUCA ...(((..((((((((...)))).))))..)))..................................((((((..(((.......))).)))))).............. ( -16.30) >consensus CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU_CGCUCCCUACAAAUUUUCA ...(((..((((((((...)))).))))..))).............................((((((..(((....)))..))))))..................... (-15.40 = -15.16 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006