Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,886,423 – 6,886,516 |
Length | 93 |
Max. P | 0.950436 |
Location | 6,886,423 – 6,886,516 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -21.00 |
Energy contribution | -20.95 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.11 |
Mean z-score | -1.18 |
Structure conservation index | 0.97 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6886423 93 - 27905053 -----UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA -----......(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) ( -22.00) >DroSec_CAF1 40625 93 - 1 -----UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCUAUUUGAGA -----.(((((..(.(((((..((((......((((((((((.....)))).))))))......(((((....))))))))))))))...)..))))) ( -22.10) >DroSim_CAF1 40921 93 - 1 -----UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA -----......(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) ( -22.00) >DroEre_CAF1 41519 92 - 1 -----UU-UUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA -----..-...(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) ( -22.00) >DroYak_CAF1 41448 92 - 1 -----UU-UUAUUUUAGGCGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA -----..-........((.((.((((......((((((((((.....)))).))))))......(((((....)))))))))...)).))........ ( -19.10) >DroAna_CAF1 38823 98 - 1 AUGUAUUUCUUCUUUUUGUGACUUGCACACGAUUGCAAGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGG .((((...((..((...((((((((((......)))))))))).))..))...)))).(((...(((((....)))))..))).(((.......))). ( -23.00) >consensus _____UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA ...........(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) (-21.00 = -20.95 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:40 2006