Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,883,843 – 6,883,936 |
Length | 93 |
Max. P | 0.875083 |
Location | 6,883,843 – 6,883,936 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 83.67 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -19.91 |
Energy contribution | -19.97 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.48 |
Structure conservation index | 0.80 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6883843 93 + 27905053 GUCGGAUGAUGAUGCCAGGGAGCGGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA ....((((.(((((.....(((..((.((...((((((((.(((....)))))))))))((((....)))).))))..)))..))))))))). ( -28.70) >DroVir_CAF1 41852 77 + 1 --CGACUGA--------------CGGCGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA --.((.(((--------------((..((...((((((((.(((....)))))))))))(((((.....))))).....))..)))))..)). ( -23.50) >DroGri_CAF1 40384 77 + 1 --CGUUUGA--------------CGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA --....(((--------------((..((...((((((((.(((....)))))))))))(((((.....))))).....))..)))))..... ( -22.50) >DroWil_CAF1 37571 93 + 1 GGAGGAUGAUGACGACUGACGACUGAGGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA ....((((.(((((..(((....((((((...((((((((.(((....)))))))))))((((....)))).)))))).))).))))))))). ( -29.90) >DroMoj_CAF1 42922 77 + 1 --CGACUGA--------------CGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAAUGUCACAUCA --.((.(((--------------((.......((((((((.(((....)))))))))))(((((.....))))).........)))))..)). ( -20.70) >DroAna_CAF1 36473 93 + 1 GUCGGAUGAUGAUGCCAAGGAGCGGACGACAAAGCGUGGGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA ....((((.(((((.....(((..((.((...((((((.....((.....)).))))))((((....)))).))))..)))..))))))))). ( -24.30) >consensus __CGGAUGA______________CGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA ........................((((....((((((((.(((....)))))))))))(((((.....))))).........))))...... (-19.91 = -19.97 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:39 2006