Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 986,697 – 986,790 |
Length | 93 |
Max. P | 0.844153 |
Location | 986,697 – 986,790 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -17.96 |
Consensus MFE | -8.02 |
Energy contribution | -7.46 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -2.64 |
Structure conservation index | 0.45 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844153 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 986697 93 + 27905053 -----------------------AAAGGAAUUUCGCAAUUUAAUUG-UGAAUUCCUGAGGAAAGCACUUAAAACGCCCCUCCUCCCUUCAGAUAACGCAUUUCUUUACUCCCACAAU -----------------------..(((((((.((((((...))))-)))))))))(((((..((.........))...)))))................................. ( -18.10) >DroSec_CAF1 32445 116 + 1 GUGUAGCGCCUUCAGCUGCAUCAAAAGGAAUUUCGCAAUUUAAUUG-UGAAUUCCUGAGGAAAGCACUUAAAACGCCCCUCCUCUCUUCAGAUAACACAUUUCUUUACUCCCACAAU (((((((.......)))))))....(((((((.((((((...))))-)))))))))(((((..((.........))...)))))................................. ( -26.90) >DroSim_CAF1 33602 93 + 1 -----------------------AAAGGAAUUUCGCAAUUUAAUUG-UGAAUUCCUAAGGAAAGCACUUAAAACGCCCCUCCUCUCUUCAGAUAACACAUUUCUUUACUCCCACAAU -----------------------..(((((((.((((((...))))-))))))))).((((..((.........))...)))).................................. ( -14.80) >DroEre_CAF1 34320 91 + 1 -----------------------AAUGGAAUUUUGCAAUUUAAUUG-GGAAUUUCUGAGGAAAGCACUUAAAAC--CCAUCCUCUCUACUUAUAACACAUUUCUUUACUCCCACAAU -----------------------...((((.(((.((((...))))-.))).))))(((((.............--...)))))................................. ( -10.39) >DroYak_CAF1 36027 92 + 1 -----------------------AAUGGAAUUUUCCAAUUUAAUUGUGGAAUUUUUGAGGAAAGCACCUAUAAC--CCCUGCUCUCUUCAAAUAACAAAUUUCUUUACUCCCACAAU -----------------------..((((....)))).....(((((((....((((((((.((((........--...)))).))))))))....(((....)))....))))))) ( -19.60) >consensus _______________________AAAGGAAUUUCGCAAUUUAAUUG_UGAAUUCCUGAGGAAAGCACUUAAAACGCCCCUCCUCUCUUCAGAUAACACAUUUCUUUACUCCCACAAU ..........................(((((((..((((...))))..)))))))((((((((....................................)))))))).......... ( -8.02 = -7.46 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:43 2006