Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,879,871 – 6,879,961 |
Length | 90 |
Max. P | 0.883417 |
Location | 6,879,871 – 6,879,961 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -26.89 |
Energy contribution | -27.12 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.09 |
Mean z-score | -1.44 |
Structure conservation index | 0.90 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6879871 90 + 27905053 ----GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA ----((...((..(((((((((((....))))))..)).)))..))....))..((((((......))))))...((((......))))..... ( -29.40) >DroSec_CAF1 34133 90 + 1 ----GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA ----((...((..(((((((((((....))))))..)).)))..))....))..((((((......))))))...((((......))))..... ( -29.40) >DroSim_CAF1 34496 90 + 1 ----GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUCAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA ----((...((..(((((((((((....))))))..)).)))..))....))..((((((......))))))...((((......))))..... ( -31.50) >DroEre_CAF1 35155 90 + 1 ----GAGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA ----.....((..(((((((((((....))))))..)).)))..))........((((((......))))))...((((......))))..... ( -28.30) >DroYak_CAF1 35084 87 + 1 ----G---UGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA ----.---.((..(((((((((((....))))))..)).)))..))........((((((......))))))...((((......))))..... ( -28.30) >DroAna_CAF1 32851 94 + 1 CGGUGUGGUGGUGGAGCAGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGCACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGAAGAAAGA ((((((((..((((....((((((....))))))....))))..))..))))..((((((......))))))..........)).......... ( -31.50) >consensus ____GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA .........((..(((((((((((....))))))..)).)))..))........((((((......))))))...((((......))))..... (-26.89 = -27.12 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:36 2006