Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,879,432 – 6,879,526 |
Length | 94 |
Max. P | 0.552091 |
Location | 6,879,432 – 6,879,526 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.55 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -13.22 |
Energy contribution | -13.69 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.12 |
Mean z-score | -2.16 |
Structure conservation index | 0.51 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6879432 94 - 27905053 CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCCAGCAUCGCCAAUGCCUUUGCGAUAAAUGGCAUCCAGAUGGCAGUUA (((((.....(((((((((((((.....).))....)))))))))-)(((..(((((.((.....)))))))...))).........)))))... ( -27.30) >DroVir_CAF1 37364 80 - 1 --GCAUAUUCCAAAAUUGUCGCCCCAUGCCCCAUUAGAUACUCU-----------GGCAAUGC--UGGCGAUAAAUGAUUGCCAGCUGGCAGUUC --...........(((((((......((((.....((.....))-----------))))..((--(((((((.....))))))))).))))))). ( -23.80) >DroSim_CAF1 34060 94 - 1 CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUA (((((.....(((((((((((((.....).))....)))))))))-)..(((((.....))))).(((.(((.......))))))..)))))... ( -29.10) >DroEre_CAF1 34719 94 - 1 CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUC (((((.....(((((((((((((.....).))....)))))))))-)..(((((.....))))).(((.(((.......))))))..)))))... ( -29.10) >DroYak_CAF1 34646 95 - 1 CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUUACCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUA .((((......((((((((((((.....).))....)))))))))....))))..((((((((((.(......).)))))).....))))..... ( -26.90) >DroAna_CAF1 32420 83 - 1 UUGUCCGUAUAAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCU-----------UGGCUCUGCGAUAAAUGGCAUCCAGAUGGCAGUUA ..(.(((....((((((((((((.....).))....)))))))))-...-----------)))).((((.((...(((...))).)).))))... ( -19.20) >consensus CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU_CCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUA ...........(((((((((................)))))))))....................((((.((...((.....)).)).))))... (-13.22 = -13.69 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:35 2006