Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,878,086 – 6,878,197 |
Length | 111 |
Max. P | 0.704736 |
Location | 6,878,086 – 6,878,197 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -35.47 |
Consensus MFE | -19.84 |
Energy contribution | -20.81 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.20 |
Mean z-score | -2.71 |
Structure conservation index | 0.56 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6878086 111 - 27905053 ------GUUGCU--UUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGC-UGUCAACUUGGGCGUCGCUGCCAUCGC ------.((((.--.......))))((((((((((((......))))))))))))....((....((((.(((((.(((((((......)))-.)))).....))))).))))...)).. ( -34.50) >DroVir_CAF1 35850 106 - 1 -U----GUUGCU----GCUUUACAAAAUUGCUUGUUUACUUCAAAGCGUGCAUUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC-UGUCA-CUUGGGCGUCGCUGACA---C -.----((.(((----(..((((((((.(((.(((((......))))).))).)).))))))...)))).))((((((((((....(((((.-...))-.))).))))).))))).---. ( -32.80) >DroPse_CAF1 39775 113 - 1 GUGUUGGCUGCU--UUCUUUUUCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGUAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGC-UGUCA-CUUGGGCGG-GCGGGCGUC-- .....(.((((.--...........((((((((((((......))))))))))))((.(((((....)))))(((.(((((((......)))-.))))-....)))))-)))).)...-- ( -36.20) >DroGri_CAF1 34166 106 - 1 -U----GUUGCA----GCUUUGCAAAAUUGCUUGUUUACUUCAAAGCGUGCAAUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC-UGUCA-CUUGGGCGACGCUGACA---C -.----...(((----(((((((((((((((.(((((......))))).)))))).))))))....))))))(((((.((((....(((((.-...))-.))).))).).))))).---. ( -36.30) >DroWil_CAF1 32014 106 - 1 ----GAGUUACUGCUCCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCGUGUAGCAUCAGCUGCAUCAUGACGCAAAACAAUGCCUGUCA-CUUAGGCAAC---------AA ----((((....)))).((((((..((((((((((((......)))))))))))).(((((((....)))))))......))))))...((((((...-..))))))..---------.. ( -37.50) >DroMoj_CAF1 36135 106 - 1 -U----GUUGCU----GCUUUACAAAAUUGCUUGUUUACUUCAAAGCGUGCAUUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC-UGUCA-CUUGGGCGCCGCUGACA---C -.----((.(((----(..((((((((.(((.(((((......))))).))).)).))))))...)))).))((((((((((....(((((.-...))-.))).))))).))))).---. ( -35.50) >consensus _U____GUUGCU____CCUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC_UGUCA_CUUGGGCGACGCUGACA___C ......(((((..............((((((.(((((......))))).))))))...))))).((((((((((....)))))..........((((......))))..)))))...... (-19.84 = -20.81 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:34 2006