Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,875,697 – 6,875,793 |
Length | 96 |
Max. P | 0.862598 |
Location | 6,875,697 – 6,875,793 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -14.24 |
Consensus MFE | -14.38 |
Energy contribution | -14.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 1.01 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6875697 96 - 27905053 GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU .....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06) >DroSec_CAF1 29933 96 - 1 GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUACAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU .....(((((...............))))).........((((((((((.((...((..((......))..))...)).))))))))))....... ( -10.96) >DroSim_CAF1 30256 96 - 1 GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU .....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06) >DroEre_CAF1 30996 96 - 1 GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU .....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06) >DroYak_CAF1 30782 96 - 1 GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU .....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06) >consensus GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU .....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... (-14.38 = -14.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:33 2006