Locus 2522

Sequence ID 3R_DroMel_CAF1
Location 6,867,573 – 6,867,665
Length 92
Max. P 0.726033
window4126

overview

Window 6

Location 6,867,573 – 6,867,665
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 77.39
Mean single sequence MFE -13.41
Consensus MFE -8.80
Energy contribution -8.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.66
SVM decision value 0.41
SVM RNA-class probability 0.726033
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6867573 92 + 27905053
CAGUCCC--ACUUCCGCUCCCUUUUCCAUCCCACG-GGCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAACUUUA
((((((.--.........................)-)))))....(((((((((((...(((((....)))))...))))..)))))))...... ( -14.07)
>DroVir_CAF1 26687 83 + 1
------------UUCGUAAAGACUUGUAGCCCGCAUGCCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAAGUUUA
------------.......((((((.((((..(....)..))))..((((((((((...(((((....)))))...))))..)))))))))))). ( -13.90)
>DroGri_CAF1 23741 83 + 1
------------UUCGCCAACAUUUACACCCCGCAUCCCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAACUUUA
------------....................(((....)))...(((((((((((...(((((....)))))...))))..)))))))...... ( -10.50)
>DroEre_CAF1 22689 92 + 1
CAGUC--CCACUUUCGCCCCCUUUUCCGCCCCUCG-GGCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAACUUUA
(((((--(.......((..........)).....)-)))))....(((((((((((...(((((....)))))...))))..)))))))...... ( -14.80)
>DroMoj_CAF1 26029 74 + 1
------------UC---------CUGGACCCCGCAGCCCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAACUUUA
------------..---------((((.....(((((((((......))).))))))..(((((....)))))..))))................ ( -14.90)
>DroAna_CAF1 20924 72 + 1
CA----------------------UCCGCCCCUCC-GGCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAACUUUA
..----------------------...(((.....-)))......(((((((((((...(((((....)))))...))))..)))))))...... ( -12.30)
>consensus
____________UUCGC___C_UUUCCACCCCGCA_GCCUGCUAAUUUAGUGGCUGCACAUUAUUAUCAUAGUCAUCAGCAUCAUUAAAACUUUA
.............................................(((((((((((...(((((....)))))...))))..)))))))...... ( -8.80 =  -8.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:28 2006