Locus 2521

Sequence ID 3R_DroMel_CAF1
Location 6,866,201 – 6,866,302
Length 101
Max. P 0.954379
window4125

overview

Window 5

Location 6,866,201 – 6,866,302
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.49
Mean single sequence MFE -14.29
Consensus MFE -13.00
Energy contribution -13.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.91
SVM decision value 1.44
SVM RNA-class probability 0.954379
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6866201 101 + 27905053
AUACAUCCACACAAUCGUAAAGCACAGCCAACUUCCUUUCGUGAUGCAGACACAAAUAAUAAAAACGCAAUGAAAGCAUAAAACUAGAAAGGAAACGCUUC
.........................(((....(((((((((((.......))).............((.......)).........))))))))..))).. ( -14.40)
>DroSec_CAF1 20563 100 + 1
-CACAUCCACACAAUCGUAAAGCACAGCCAACUUCCUUUCGUGAUGCAGACACAAAUAAUAAAAACGCAAUGAAAGCAUAAAACUAGAAAGGAAACGCUUC
-........................(((....(((((((((((.......))).............((.......)).........))))))))..))).. ( -14.40)
>DroSim_CAF1 20740 101 + 1
ACACAUCCACACAAUCGUAAAGCACAGCCAACUUCCUUUCGUGAUGCAGACACAAAUAAUAAAAACGCAAUGAAAGCAUAAAACUAGAAAGGAAACGCUUC
.........................(((....(((((((((((.......))).............((.......)).........))))))))..))).. ( -14.40)
>DroYak_CAF1 20862 101 + 1
AGAUAUCCACACAAUCGUAAAGCACAGCCAACUUCCUUUCGUGAUGCAGACACAAAUAAUAAAAACGCAAUGAAAGCAUAAAACUAGAAAGGAAACGCUUC
.........................(((....(((((((((((.......))).............((.......)).........))))))))..))).. ( -14.40)
>DroAna_CAF1 19675 86 + 1
---------------GAUAAAGCACAACCAACUUCCUUUCGUGAUGCAGACACAAAUAAUAAAAAUGCAAUGAAAGCAGAAAACUGGAAAGGAAACCCAUA
---------------.................((((((((....((((.................)))).......(((....)))))))))))....... ( -13.83)
>consensus
ACACAUCCACACAAUCGUAAAGCACAGCCAACUUCCUUUCGUGAUGCAGACACAAAUAAUAAAAACGCAAUGAAAGCAUAAAACUAGAAAGGAAACGCUUC
................................(((((((((((.......))).............((.......)).........))))))))....... (-13.00 = -13.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:27 2006