Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,865,543 – 6,865,648 |
Length | 105 |
Max. P | 0.681340 |
Location | 6,865,543 – 6,865,648 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -20.56 |
Energy contribution | -20.44 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.58 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6865543 105 - 27905053 UGCCAAAGUCCAUUUCCUGCAAAAACCGGAGGAGACAGUGUUUCGUCAAUACUCAAGGAUGAACAUGGAUAAAAAUAGAUUGAACACGAGGACAAUCGUUAGAAG .......((((.((((((.(.......).))))))..(((((.((((..........))))))))))))).......(((((..(....)..)))))........ ( -21.90) >DroSec_CAF1 19916 102 - 1 UGCCAAAGUCCAUUUCCUGCAAAAAGCGUAGGAGACAGUGUUUCGUCAAUACUCAAGGGUGAACAUGGAUAAAAAUAGAUGGAACACGAGGACAAUCGUUA---G .......((((.((((((((.......))))))))..((((((((((..((((....))))...((........)).))))))))))..))))........---. ( -30.20) >DroSim_CAF1 20086 102 - 1 UGCCAAAGUCCAUUUCCUGCAAAAAGCGUAGGAGACAGUGUUUCGUCAAUACUCAAGGGUGAACAUGGAUAAAAAUAGAUUGAACACGAGGACAAUCGUUA---G .......((((.((((((((.......))))))))..((((((.(((..((((....))))...((........)).))).))))))..))))........---. ( -25.60) >DroEre_CAF1 20531 102 - 1 UGCCAAAGUCCAUUUCCUGCAAAAAGCGGAGGAGACAGUGUUUCGUCAAUACUCAAGGGUGAAGAUGGGUAAAAAUAGAUUGAGUACGAGGACAAUCGUUA---G ((((...(((..((..((((.....))))..))))).......((((..((((....))))..))))))))......(((((..........)))))....---. ( -21.50) >DroYak_CAF1 20172 102 - 1 UGCCAAAGUCCAUUUCCUGCAAAAAGCGGAGGAGACAGUGUUUCGUCAAUACUCAAGGGUGAACAUGGGUAAAAAUAGAUUGAACACGAGGACAAUCGUUG---G ..((((.((((.((((((.(.......).))))))..((((((.(((..((((((.(......).))))))......))).))))))..)))).....)))---) ( -27.50) >consensus UGCCAAAGUCCAUUUCCUGCAAAAAGCGGAGGAGACAGUGUUUCGUCAAUACUCAAGGGUGAACAUGGAUAAAAAUAGAUUGAACACGAGGACAAUCGUUA___G .......((((.((((((.(.......).))))))..((((((.(((..((((....))))...((........)).))).))))))..))))............ (-20.56 = -20.44 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:26 2006