Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 982,496 – 982,593 |
Length | 97 |
Max. P | 0.800381 |
Location | 982,496 – 982,593 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 91.64 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -20.42 |
Energy contribution | -21.53 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.33 |
Structure conservation index | 0.85 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 982496 97 + 27905053 AUUCGAAUAUUUACCGAGACAAUAAAUUCGGUUUUGAACAAGUGGGGCAACCCCCUAUACUAUACUCUAUGUACAUACAUACUAGUCUCGUAAUGGC ..............((((((....................((.(((....))).))...........(((((....)))))...))))))....... ( -19.40) >DroSec_CAF1 28106 93 + 1 AUUCGAAUAUUUACAGAGACAAUAAAUUCGGUUUUGGACAAGUGGGGCAACCCACUAUGCUACACUCUAUGUACA----CACUUGUCUCGUAAUGGC ..........((((.(((((((..................((((((....)))))).((.((((.....))))))----...))))))))))).... ( -24.70) >DroSim_CAF1 29396 93 + 1 AUUCGAAUAUUUACCGAGACAAUAAAUUCGGUUUUGGACAAGUGGGGCAACCCACUAUGCCAUACUCUAUGUACA----CACUUGUCUCGUAAUGGC ..............((((((((............(((.((((((((....)))))).)))))(((.....)))..----...))))))))....... ( -28.00) >consensus AUUCGAAUAUUUACCGAGACAAUAAAUUCGGUUUUGGACAAGUGGGGCAACCCACUAUGCUAUACUCUAUGUACA____CACUUGUCUCGUAAUGGC ..........((((.(((((((............(((...((((((....))))))...)))(((.....))).........))))))))))).... (-20.42 = -21.53 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006