Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,863,777 – 6,863,872 |
Length | 95 |
Max. P | 0.970328 |
Location | 6,863,777 – 6,863,872 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 87.57 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -28.30 |
Energy contribution | -27.92 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.18 |
Mean z-score | -3.82 |
Structure conservation index | 0.80 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6863777 95 + 27905053 UCCCUUUUGGCCCGUU------GGUGUUGAUGCGCAGUGUUGGCAGCUGCCAACAUGGCGCCUUUCUGCCAACACUUUAGCCAUAUA----------CAAACACUAACACA ..((....))...(((------((((((.(((.(((((((((((((.((((.....)))).....)))))))))))...)))))...----------..)))))))))... ( -37.30) >DroSec_CAF1 18044 95 + 1 UCCCUUUUGGCCCGUU------GGUGUUGAUGCGCAGUGUUGGCAGCUGCCAACAUGGCGCCUUUGUACCAACACUUUAGCCAUAUA----------CAAACACUAACACA .......((((..(((------((((..((.((((.((((((((....)))))))).)))).))..)))))))......))))....----------.............. ( -35.10) >DroSim_CAF1 18247 94 + 1 UCCCUUUUGGCCCGUU------GGUGUUGAUGCGCAGUGUUGGCAGCUGCCAACAUGGCGCCUUUGUGCCAACACUUUAGCCAUAUA----------CAAACACUAACAC- ..((....))...(((------((((((.(((.((((((((((((((.(((.....))))).....))))))))))...)))))...----------..)))))))))..- ( -36.00) >DroEre_CAF1 18738 95 + 1 UCCCUUUUGGCCCGUU------GGUGUUGAUGCGCAGUGUUGGCAGCUGCCAACAUGGCGCCUUUGUGCCAACACUUUAGCCACAUA----------CAAACACUAACACA ..((....))...(((------((((((.(((.((((((((((((((.(((.....))))).....))))))))))...))..))).----------..)))))))))... ( -35.60) >DroYak_CAF1 18347 105 + 1 UCCCUUUUGGCCCGGU------GGUGUUGAUGCGCAGUGUUGGCAGCUGCCAACAUGGCGCCUUUGUGCCAACACUUUAGCCACAUACAGUAUAGUACAAACACCAACACA ..((....))...(.(------((((((...((((.((((((((....)))))))).))))...(((((....(((.((......)).)))...)))))))))))).)... ( -35.00) >DroAna_CAF1 16706 97 + 1 UCCCU-UUGGCCUGUUGUUGAUGGUGUUGAUGUGCAGUGUUGGCAGCUGCCAACUCGGCGCUUUUGUGCUAACACUUCUGCCACCCA----------CA-ACAAUAACA-- .....-......((((((((..((((..((.(((..(.((((((....)))))).)(((((....)))))..))).))...))))..----------))-))))))...-- ( -33.50) >consensus UCCCUUUUGGCCCGUU______GGUGUUGAUGCGCAGUGUUGGCAGCUGCCAACAUGGCGCCUUUGUGCCAACACUUUAGCCACAUA__________CAAACACUAACACA .......((((...........((((..((.((((.((((((((....)))))))).)))).))..)))).........))))............................ (-28.30 = -27.92 + -0.39)
Location | 6,863,777 – 6,863,872 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.57 |
Mean single sequence MFE | -33.56 |
Consensus MFE | -26.27 |
Energy contribution | -26.94 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.29 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6863777 95 - 27905053 UGUGUUAGUGUUUG----------UAUAUGGCUAAAGUGUUGGCAGAAAGGCGCCAUGUUGGCAGCUGCCAACACUGCGCAUCAACACC------AACGGGCCAAAAGGGA ..............----------....(((((....((((((.......((((..(((((((....)))))))..)))).......))------)))))))))....... ( -32.64) >DroSec_CAF1 18044 95 - 1 UGUGUUAGUGUUUG----------UAUAUGGCUAAAGUGUUGGUACAAAGGCGCCAUGUUGGCAGCUGCCAACACUGCGCAUCAACACC------AACGGGCCAAAAGGGA ..............----------....(((((....(((((((......((((..(((((((....)))))))..))))......)))------)))))))))....... ( -34.30) >DroSim_CAF1 18247 94 - 1 -GUGUUAGUGUUUG----------UAUAUGGCUAAAGUGUUGGCACAAAGGCGCCAUGUUGGCAGCUGCCAACACUGCGCAUCAACACC------AACGGGCCAAAAGGGA -.............----------....(((((....((((((.......((((..(((((((....)))))))..)))).......))------)))))))))....... ( -32.64) >DroEre_CAF1 18738 95 - 1 UGUGUUAGUGUUUG----------UAUGUGGCUAAAGUGUUGGCACAAAGGCGCCAUGUUGGCAGCUGCCAACACUGCGCAUCAACACC------AACGGGCCAAAAGGGA ..((((.(((((.(----------.(((((.....((((((((((.....(((((.....))).)))))))))))).))))))))))).------))))..((....)).. ( -33.20) >DroYak_CAF1 18347 105 - 1 UGUGUUGGUGUUUGUACUAUACUGUAUGUGGCUAAAGUGUUGGCACAAAGGCGCCAUGUUGGCAGCUGCCAACACUGCGCAUCAACACC------ACCGGGCCAAAAGGGA .((((((((((..((((......))))...((...((((((((((.....(((((.....))).)))))))))))))))))))))))).------.((.........)).. ( -38.10) >DroAna_CAF1 16706 97 - 1 --UGUUAUUGU-UG----------UGGGUGGCAGAAGUGUUAGCACAAAAGCGCCGAGUUGGCAGCUGCCAACACUGCACAUCAACACCAUCAACAACAGGCCAA-AGGGA --.....((((-((----------(.((((((....(((....)))....))((.(.((((((....)))))).).)).......))))....))))))).((..-..)). ( -30.50) >consensus UGUGUUAGUGUUUG__________UAUAUGGCUAAAGUGUUGGCACAAAGGCGCCAUGUUGGCAGCUGCCAACACUGCGCAUCAACACC______AACGGGCCAAAAGGGA ............................(((((...(((((((.......((((..(((((((....)))))))..)))).)))))))...........)))))....... (-26.27 = -26.94 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:25 2006