Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,862,297 – 6,862,402 |
Length | 105 |
Max. P | 0.657761 |
Location | 6,862,297 – 6,862,402 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.36 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -21.05 |
Energy contribution | -21.18 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.05 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6862297 105 - 27905053 CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCC-CCCCCAC---ACUAUCACCCCUGGAAAAUCCCUCUUCCUGUCCCGGCCCAUG ...((.(((..(((...........(((((((((........))))))))).....-.......---............((((........)))))))...)))))... ( -23.50) >DroSec_CAF1 16627 109 - 1 CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCUCCCCCCACCCUACUUUCGCCCCUGGAACAUCCCUCUUCCUGUCCCGGCCCAUG ..(((((.((.......))......(((((((((........)))))))))..........))))).......(((...((((........))))......)))..... ( -24.90) >DroEre_CAF1 17294 98 - 1 CUGGGUGCCAUGCAACUUAAACAACUGUGUUGAGAGCCUCUUCUCAGCACAUCCCCGCGUA-----------CCCCCCUGGAAAAUCCCCCUUCCUGUCCUGGUCCAUG ..((((((...)))...........(((((((((((....)))))))))))..)))..(.(-----------((.....((((........))))......))).)... ( -24.30) >DroYak_CAF1 16834 102 - 1 CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCAGCAUCCACC-------CCCCCCUGGAAUAUCCGCCUUCCUGUCCUGGGCCAUG .(((((((((.......))......(((((((((........))))))))).....)))))))((-------(......((((........))))......)))..... ( -28.00) >consensus CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCCGCCCCCAC________CCCCCCUGGAAAAUCCCCCUUCCUGUCCCGGCCCAUG ...((.(((..(((...........(((((((((........)))))))))............................((((........)))))))...)))))... (-21.05 = -21.18 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:23 2006