Locus 2517

Sequence ID 3R_DroMel_CAF1
Location 6,859,775 – 6,859,881
Length 106
Max. P 0.621879
window4120

overview

Window 0

Location 6,859,775 – 6,859,881
Length 106
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 83.26
Mean single sequence MFE -27.00
Consensus MFE -17.82
Energy contribution -17.26
Covariance contribution -0.56
Combinations/Pair 1.24
Mean z-score -1.72
Structure conservation index 0.66
SVM decision value 0.18
SVM RNA-class probability 0.621879
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6859775 106 - 27905053
CGAAAACUUUCAGCGACAUCAAGGAGAAAUGCAAGGGAAAGCUGAGUUGCGCAGGCCAAGGAAUAUUCAAUUUUCUAAUCCUUGGCCAGAGAAAAUCUCUCAAC-UG
.........(((((....((..(.(....).)..))....)))))((((....(((((((((.((..........)).)))))))))((((.....))))))))-.. ( -30.00)
>DroSec_CAF1 14056 106 - 1
CGAAAACUUUCAGCGACAUCAAGGAGAAAUGCAAGGGAAAGCUGAGUUGCGCAGGCCAGGGAAUAUUAAAUUUUCUAAUCCUUGGCCGGCGAAAAUCUUUCAAC-UG
.((((...((((((....((..(.(....).)..))....))))))...(((.(((((((((.((..........)).))))))))).)))......))))...-.. ( -31.40)
>DroEre_CAF1 14720 106 - 1
CGAAAACUUUUAGCGACAUCAAGGAGAAAUGCAAGGGAAAGCUGAGUUGAGCAGGCCAGGGAAUAUUCAAUUUUCUAAUCCUUGGCCGGCGAAAAUCUUUCAAC-CG
.........(((((....((..(.(....).)..))....)))))(((((((.(((((((((.((..........)).))))))))).))(.....)..)))))-.. ( -27.50)
>DroAna_CAF1 13018 98 - 1
CUACAACUUUCGGCAACUGCAAAGAGAAAUGCAAA--------GAGUUAUGCAGGCCAA-GAAAAUUCCAUUUUAUAAUCCUUGGUCGGGUAAAAUCUUUCAAUGUC
..(((.((((..((....))..))))...((.(((--------((....(((.((((((-(...................)))))))..)))...))))))).))). ( -19.11)
>consensus
CGAAAACUUUCAGCGACAUCAAGGAGAAAUGCAAGGGAAAGCUGAGUUGCGCAGGCCAAGGAAUAUUCAAUUUUCUAAUCCUUGGCCGGCGAAAAUCUUUCAAC_UG
......................(((((..(((..................)))(((((((((................)))))))))........)))))....... (-17.82 = -17.26 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006