Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,858,686 – 6,858,787 |
Length | 101 |
Max. P | 0.755246 |
Location | 6,858,686 – 6,858,787 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.38 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -22.74 |
Energy contribution | -24.38 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.24 |
Mean z-score | -2.07 |
Structure conservation index | 0.67 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6858686 101 + 27905053 AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGGAUACCGAUGAACGGCGA-ACUGAAC-UCUCCGCA ...((((((((....)))))))).((...((((..............))))..)).((((((((((((....))))))..(((...-.)))...-.)))))). ( -34.34) >DroSec_CAF1 13056 101 + 1 AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGGAUACCGAUGAACGGCGA-ACUGAAC-UCCCCGCA ...((((((((....)))))))).((...((((..............))))..)).((((((((((((....))))))..(((...-.)))...-.)))))). ( -37.34) >DroEre_CAF1 13639 101 + 1 AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGUAUACCAACGAACGGCGA-ACUGAAC-UCCCAGCA ...((((((((....)))))))).((...((((..............))))..)).((((((..(((((...((.......))...-)))))..-)))).)). ( -27.04) >DroYak_CAF1 13295 101 + 1 AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUUGGGAUACCGAUGAACGGCGA-GCUCAAC-UCCCCGCA ...((((((((....)))))))).((...((((..............))))..)).((((((..(((((...(((.....)))...-.))))).-.)))))). ( -35.94) >DroAna_CAF1 12270 103 + 1 AAAUGAGCAUUAUUGAGUGUUCGAGUACGGCCCGAGAUGGGGCUGAAUGGGAAGCUGGCGAGCAGCUGACAAAAAAUGGGCUCUGAAGCUGAUUUUUCUCGCA ....(((((((....)))))))(((..((((((......))))))....(..(((((.....)))))..).((((((.((((....)))).)))))))))... ( -35.10) >consensus AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGGAUACCGAUGAACGGCGA_ACUGAAC_UCCCCGCA ...((((((((....)))))))).((...((((..............))))..)).((((((((((((....))))))..(((.....))).....)))))). (-22.74 = -24.38 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:21 2006