Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,857,632 – 6,857,732 |
Length | 100 |
Max. P | 0.796881 |
Location | 6,857,632 – 6,857,732 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 99.20 |
Mean single sequence MFE | -24.59 |
Consensus MFE | -23.57 |
Energy contribution | -23.77 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.96 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6857632 100 + 27905053 GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU ((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... ( -24.69) >DroSec_CAF1 12039 100 + 1 GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU ((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... ( -24.69) >DroSim_CAF1 13956 100 + 1 GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU ((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... ( -24.69) >DroEre_CAF1 12574 100 + 1 GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGGUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU ((((.((((................)))).))))((((......))))..(((((.((((.....))))((....)).......)))))........... ( -22.99) >DroYak_CAF1 12246 100 + 1 GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCCAGAAGGU ((((.((((................)))).))))......((.(((((..((....((((.....))))((....))))..).)))).))(((....))) ( -25.89) >consensus GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU ((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... (-23.57 = -23.77 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:19 2006