Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,852,150 – 6,852,241 |
Length | 91 |
Max. P | 0.640221 |
Location | 6,852,150 – 6,852,241 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 89.23 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -20.30 |
Energy contribution | -20.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.24 |
Mean z-score | -1.78 |
Structure conservation index | 0.84 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6852150 91 + 27905053 UUAUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA .......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -25.10) >DroSec_CAF1 6579 91 + 1 UUAUUUCCCUUGUCCCUUCGUUGUAGUUUAGUUUUCUGUGUCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA .......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -26.20) >DroSim_CAF1 8492 91 + 1 UUAUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA .......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -25.10) >DroEre_CAF1 6652 91 + 1 UCAUUUCCCUUGUCCCUUCGUUUCAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA .......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -24.40) >DroYak_CAF1 6726 91 + 1 UUGUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA .(((((.((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))..))))) ( -26.60) >DroAna_CAF1 6425 87 + 1 UU----UUAUUUUUUUUUUGUUAGAUUUUUUUUUACUGUUCCGACUUAAAGUCACCGCUAAUGAACUUGUUGAGCGGGAAAAAGAUAGAUG .(----(((((((((((.........................(((.....))).((((((((......))).))))))))))))))))).. ( -17.60) >consensus UUAUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA .......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... (-20.30 = -20.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:18 2006