Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,848,959 – 6,849,061 |
Length | 102 |
Max. P | 0.821613 |
Location | 6,848,959 – 6,849,061 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 76.40 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -10.28 |
Energy contribution | -9.86 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.13 |
Mean z-score | -2.17 |
Structure conservation index | 0.46 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6848959 102 - 27905053 UUUGGCGU--GACAGCAGC-AUUUUGUUGAUUUAUUUAAAUUGUGUGUGAAAAAUCGAAAUCGAAAUG------------GAAAU-GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA ....((.(--(.((....(-(((((((((((((.((((.........)))))))))))...)))))))------------....)-).)).))..((((((((....))))))))... ( -20.90) >DroVir_CAF1 4858 93 - 1 UU-------------UACCAUUUUUGUUUAUUCAUUCAAAUUGCGUGUGAAAAAUCGAAAACGCAAUG------------AAAAUGGACAAGCAAUGCAAUUAAAAUUAAUUGCAACG ..-------------........((((((.((((((...(((((((.(((....)))...))))))).------------..)))))).))))))((((((((....))))))))... ( -26.00) >DroPse_CAF1 4845 115 - 1 UUCGUUGCCGGGCAGC-GC-UUUUUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUGGAAAUGGAAAUGAAAAU-GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA ...((((((...((..-..-((((..((......((((..((((...(((....)))...))))..))))......))..)))))-)...))))))(((((((....))))))).... ( -22.80) >DroWil_CAF1 3732 101 - 1 AU---------------UC-UUUCUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUCGAAAUGCGAAUGCAAAU-GACAUGCAAUGCAAUUAAAAUUAAUUGCAACA ..---------------..-......((((.....))))(((((((((.(....((((........))))..(((....)))..)-.)))))))))(((((((....))))))).... ( -20.50) >DroMoj_CAF1 5538 93 - 1 UU-------------UGCCAUUUAUGUUUAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGCAAUG------------AAAAUCGACAAGCAACGCAAUUAAAAUUAAUUGCGGUG ..-------------.(((.....(((((.((.(((...(((((((.(((....)))...))))))).------------..))).)).)))))..(((((((....)))))))))). ( -21.10) >DroPer_CAF1 5006 115 - 1 UUCGUUGCCGGGCAGC-GC-UUUUUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUGGAAAUGGAAAUGAAAAU-GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA ...((((((...((..-..-((((..((......((((..((((...(((....)))...))))..))))......))..)))))-)...))))))(((((((....))))))).... ( -22.80) >consensus UU_____________C_GC_UUUUUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUG____________AAAAU_GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA ........................................((((.(((.......................................))).))))((((((((....))))))))... (-10.28 = -9.86 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:17 2006