Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,847,954 – 6,848,056 |
Length | 102 |
Max. P | 0.845968 |
Location | 6,847,954 – 6,848,056 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.34 |
Mean single sequence MFE | -25.43 |
Consensus MFE | -16.24 |
Energy contribution | -16.68 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.32 |
Mean z-score | -1.66 |
Structure conservation index | 0.64 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6847954 102 - 27905053 ---UUUCAUUGUUUGUUACGUUUGCUGCGGUUGGCCGCGCAUUUUAUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUCAGCCCAAAUGCGAUAAUA-------AAAAAGGGA ---....((((..((((((((((...((((....))))((((...))))..........))))))))))...))))....(((.............-------.....))). ( -25.17) >DroVir_CAF1 3372 105 - 1 CAGUUACUGUUGUUUUUUCAUUUAUUGUGGUUGGCCGCGAAUUUUAUGCAUUAAUUUAAAGGCUUGACAUUUCAGUUAAGCCAAAAUGAAAUGAAU-------AUGAAGUAA ...(((((..(((((((((((((.((((((....))))))....................((((((((......)))))))).)))))))).))))-------)...))))) ( -30.10) >DroPse_CAF1 3243 101 - 1 ---UGUU-GUUGUUGCAACAUUUACUGCGGUUGGCCGCGCAUUUUGUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAGCCAAAAUGCGACGAUA-------AAAACUGGA ---..((-(((((((((((.......((((....))))((((...)))))))........(((.((((......)))).))).....)))))))))-------)........ ( -31.10) >DroMoj_CAF1 3803 112 - 1 GAAUCGCUGUUGUUUUUCCAUUUACUGCGGUUGGCCGCGUAUUUUAUGCAUUAAUUUAAAGGCAUGACAUUUCAGUUAAGCCAAAAUGCAAUAAAAAUAUCAAAUGAAAUAA (((..((....))..)))(((((...((((....))))(((((((.((((((........(((.((((......)))).)))..))))))...))))))).)))))...... ( -22.90) >DroAna_CAF1 2231 99 - 1 ---UUUCA---GUUGUUAUAUUUUCUGCGGUUGGCCGCGUAUUUUAAGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAACCCAAAUGAAAUAAUA-------AAAAAAAGG ---(((((---.(((...........((((....))))......................((..((((......))))..))))).))))).....-------......... ( -15.70) >DroPer_CAF1 3407 98 - 1 ---UGU----UGUUGCAACAUUUACUGCGGUUGGCCGCGCAUUUUGUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAGCCAAAAUGCGAUGAUA-------AAAACUGGA ---(((----..(((((((.......((((....))))((((...)))))))........(((.((((......)))).))).....))))..)))-------......... ( -27.60) >consensus ___UUUC_GUUGUUGUUACAUUUACUGCGGUUGGCCGCGCAUUUUAUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAGCCAAAAUGCAAUAAUA_______AAAAAAGGA ............(((((.(((((...((((....))))((((...))))...........(((.((((......)))).))).))))).))))).................. (-16.24 = -16.68 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:16 2006