Locus 2510

Sequence ID 3R_DroMel_CAF1
Location 6,844,603 – 6,844,697
Length 94
Max. P 0.629847
window4113

overview

Window 3

Location 6,844,603 – 6,844,697
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 96.31
Mean single sequence MFE -17.30
Consensus MFE -15.54
Energy contribution -16.10
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.17
Structure conservation index 0.90
SVM decision value 0.20
SVM RNA-class probability 0.629847
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6844603 94 - 27905053
CUAUUAUUACUUAGUUAUUACGCAAAAUGCUUGAUGAGUAGCCAUAAAAAGCAAUGCGACUGAACAAGUGCCAUUAAAUCCACCUGGAAAUUCA
.......(((((.(((....((((...(((((.(((......)))...))))).))))....))))))))........(((....)))...... ( -18.10)
>DroSec_CAF1 6824 94 - 1
CUAUUAUUACUUAGUUAUUACGCAAAAUGCUUGAUGAGUAGCCAUAAAAAGCAAUGCGACUAAACAAGUGCCAUUAAAUCCACCUGGAAAUUCA
.......(((((.(((....((((...(((((.(((......)))...))))).))))....))))))))........(((....)))...... ( -17.00)
>DroSim_CAF1 6824 94 - 1
CUAUUAUUACUUAGUUAUUACGCAAAAUGCUUGAUGAGUAGCCAUAAAAAGCAAUGCGACUGAACAAGUGCCAUUAAAUCCACCUGGAAAUUCA
.......(((((.(((....((((...(((((.(((......)))...))))).))))....))))))))........(((....)))...... ( -18.10)
>DroEre_CAF1 6863 94 - 1
CUAUUAUUACAUAGUUAUUACGCAAAAUGCUUGAUGAGUAGCCAUAAAAAGCAAUGCGACUGAACAAGUGCCAUUAAAUCCACCUGGAAAUUCA
.............(((....((((...(((((.(((......)))...))))).))))....))).............(((....)))...... ( -15.30)
>DroYak_CAF1 7167 94 - 1
CUAUUAUUACAUAGUUAUUACGCAAAAUGCUUGAUGAGUAGCCAUAAAAAGCAAUGCGACUGAACAAGUGCCAUUAAAUCCACCUGGUAAUUCA
.............(((....((((...(((((.(((......)))...))))).))))....)))...(((((...........)))))..... ( -15.90)
>DroAna_CAF1 6138 94 - 1
CUAUUAUUACUAAGUUAUAACGCAGAAUGCUUGAUGGGCGGCCAUAAAAAGCAAUGCGACUGAACAAGUGCCAUUAAAUCCACCUGGGAAUUCA
.......((((..(((....((((...(((((.((((....))))...))))).))))....))).))))........(((.....)))..... ( -19.40)
>consensus
CUAUUAUUACUUAGUUAUUACGCAAAAUGCUUGAUGAGUAGCCAUAAAAAGCAAUGCGACUGAACAAGUGCCAUUAAAUCCACCUGGAAAUUCA
.......(((((.(((....((((...(((((.(((......)))...))))).))))....))))))))........(((....)))...... (-15.54 = -16.10 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:15 2006