Locus 251

Sequence ID 3R_DroMel_CAF1
Location 979,201 – 979,299
Length 98
Max. P 0.949146
window440

overview

Window 0

Location 979,201 – 979,299
Length 98
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 76.89
Mean single sequence MFE -21.68
Consensus MFE -14.15
Energy contribution -14.68
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.96
Structure conservation index 0.65
SVM decision value 1.39
SVM RNA-class probability 0.949146
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 979201 98 + 27905053
------AGACUUAUAU---UUUGUUUUUUUUUUUUCC---UUUUUGCCGU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG
------.(((((((.(---((((((((..........---.....(((((--..((((...))))..)))))(((..-..)))...))))))))).))))))).......... ( -25.10)
>DroPse_CAF1 35012 92 + 1
AAAGGGAAAGUUAUAUG-----------UA----------UUUUUGCCUUUCUCUCGGCUGGCGGCUGCGGUUGACUUUGCCAAAUAAAGCACGAAAUAAGUUAAAACAUACG
...((.(((((((..((-----------((----------...(((((..((....))..))))).))))..))))))).))............................... ( -18.20)
>DroSec_CAF1 24836 103 + 1
------AAACUUAUUUCCCUUCCUUUUUUAUUUUUCUUUU-UUUUGCCGU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG
------.((((((((((.......................-....((((.--.......))))((((....((((..-..))))....)))).)))))))))).......... ( -23.20)
>DroSim_CAF1 26119 104 + 1
------AAACUUAUUUCCCUUCCUUUUUUAUUUUUCUUUUUUUUUGCCGU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG
------.((((((((((............................((((.--.......))))((((....((((..-..))))....)))).)))))))))).......... ( -23.20)
>DroEre_CAF1 25684 77 + 1
------AAACUUAUUU--------------------------UUCGCCUU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGA-AUAAGUUAAAACAUACG
------.(((((((((--------------------------((.(((..--........))).(((....((((..-..))))....)))))))-))))))).......... ( -20.50)
>DroYak_CAF1 28428 79 + 1
------AAACUUAUUU-------------------------UUUUGCGUU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG
------.(((((((((-------------------------(((.((((.--....)).((((.(((......))).-.))))......)))))))))))))).......... ( -19.90)
>consensus
______AAACUUAUUU____________UA___________UUUUGCCGU__UCUAGCCUGGCUGCUGCGGUUGGCC_UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG
.......(((((((...............................(((............)))((((....(((((...)))))....))))....))))))).......... (-14.15 = -14.68 +   0.53) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006