Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 979,201 – 979,299 |
Length | 98 |
Max. P | 0.949146 |
Location | 979,201 – 979,299 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.89 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -14.15 |
Energy contribution | -14.68 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.96 |
Structure conservation index | 0.65 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 979201 98 + 27905053 ------AGACUUAUAU---UUUGUUUUUUUUUUUUCC---UUUUUGCCGU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG ------.(((((((.(---((((((((..........---.....(((((--..((((...))))..)))))(((..-..)))...))))))))).))))))).......... ( -25.10) >DroPse_CAF1 35012 92 + 1 AAAGGGAAAGUUAUAUG-----------UA----------UUUUUGCCUUUCUCUCGGCUGGCGGCUGCGGUUGACUUUGCCAAAUAAAGCACGAAAUAAGUUAAAACAUACG ...((.(((((((..((-----------((----------...(((((..((....))..))))).))))..))))))).))............................... ( -18.20) >DroSec_CAF1 24836 103 + 1 ------AAACUUAUUUCCCUUCCUUUUUUAUUUUUCUUUU-UUUUGCCGU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG ------.((((((((((.......................-....((((.--.......))))((((....((((..-..))))....)))).)))))))))).......... ( -23.20) >DroSim_CAF1 26119 104 + 1 ------AAACUUAUUUCCCUUCCUUUUUUAUUUUUCUUUUUUUUUGCCGU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG ------.((((((((((............................((((.--.......))))((((....((((..-..))))....)))).)))))))))).......... ( -23.20) >DroEre_CAF1 25684 77 + 1 ------AAACUUAUUU--------------------------UUCGCCUU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGA-AUAAGUUAAAACAUACG ------.(((((((((--------------------------((.(((..--........))).(((....((((..-..))))....)))))))-))))))).......... ( -20.50) >DroYak_CAF1 28428 79 + 1 ------AAACUUAUUU-------------------------UUUUGCGUU--UCUAGCCUGGCUGCUGCGGUUGGCC-UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG ------.(((((((((-------------------------(((.((((.--....)).((((.(((......))).-.))))......)))))))))))))).......... ( -19.90) >consensus ______AAACUUAUUU____________UA___________UUUUGCCGU__UCUAGCCUGGCUGCUGCGGUUGGCC_UGCCAAAUAAAGCAAGAAAUAAGUUAAAACAUACG .......(((((((...............................(((............)))((((....(((((...)))))....))))....))))))).......... (-14.15 = -14.68 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006