Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,843,501 – 6,843,591 |
Length | 90 |
Max. P | 0.947465 |
Location | 6,843,501 – 6,843,591 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -35.48 |
Consensus MFE | -30.20 |
Energy contribution | -30.00 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.74 |
Structure conservation index | 0.85 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6843501 90 + 27905053 GAUAGUGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUUUGCUCCUCUGCUGCG ....(..(.(((.(((((((.(((((.((((.((((((((((......)))).))))).).)))).)).))).))))))).))).)..). ( -37.30) >DroSec_CAF1 5658 90 + 1 AAUAGUGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUCUGCUCCUCUGCUGCG ....(..(.(((.(((((...(((((.((((.((((((((((......)))).))))).).)))).)).)))...))))).))).)..). ( -34.90) >DroSim_CAF1 5666 90 + 1 GAUAGAGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUCCUGCUCCUCUGCUGCG ..((((((((((.(((((((.((.(((...)))(((((((((......)))).))))))).)))))).)....))).).))))))..... ( -34.40) >DroEre_CAF1 5749 90 + 1 GGCGGUGGGAGGUGGACAAGUGCAGGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUCUGCUCCUCUGCUGCA .((((..(.(((.(.(.((((((.(((.(((.((((((((((......)))).))))).).)))))))).)))).).).))))..)))). ( -36.70) >DroYak_CAF1 5987 90 + 1 GGCGGUGGGAGGUGGACAAGUGCAUGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUUUGCUCCUCUGCUGUG (((((.(((((((((.((((.((....(....)(((((((((......)))).))))))).)))))))))((....)))))))))))... ( -34.10) >consensus GAUAGUGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUCUGCUCCUCUGCUGCG ..(((((((((((((.((((.((.(((...)))(((((((((......)))).))))))).)))))))))((....))))))..)))).. (-30.20 = -30.00 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:14 2006