Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,841,085 – 6,841,177 |
Length | 92 |
Max. P | 0.527273 |
Location | 6,841,085 – 6,841,177 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 82.87 |
Mean single sequence MFE | -15.85 |
Consensus MFE | -9.94 |
Energy contribution | -10.72 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.07 |
Mean z-score | -1.96 |
Structure conservation index | 0.63 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6841085 92 - 27905053 UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCUCCCGCUACCUUCUA ........((.((((((((..(((.......(((.....)))...))).))))))))........((-----((.....))))...))......... ( -17.70) >DroGri_CAF1 129823 83 - 1 -GCUCAACUCCU-CCA-CUUUGACUUACUUCUACUGAUUGCACUUCUUUAAGUGGCAACUUUUU-AGCUCUCAUUUCUGUU--------GCUUUC-- -...........-.((-(((.((......((....)).......))...)))))(((((.....-.............)))--------))....-- ( -8.79) >DroSec_CAF1 3257 92 - 1 UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCGCCCGCUACCUUCUC ........((.((((((((..(((.......(((.....)))...))).)))))))).........(-----((.....)))....))......... ( -17.60) >DroSim_CAF1 3275 92 - 1 UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCGCCCGCUACCUUCUC ........((.((((((((..(((.......(((.....)))...))).)))))))).........(-----((.....)))....))......... ( -17.60) >DroEre_CAF1 3339 92 - 1 UUCUCAUCGCCUGCCACUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCUCCCGCUACCUUCUC ........((.((((((((..(((.......(((.....)))...))).))))))))........((-----((.....))))...))......... ( -18.10) >DroAna_CAF1 3101 84 - 1 UUCUCAUCGUCAGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCCCC--------UUGC ........(((((......))))).......((((((((((((((....)))).)))).....))))-----))...........--------.... ( -15.30) >consensus UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG_____CACUUUAUGCGCCCGCUACCUUCUC ...........((((((((..(((.......(((.....)))...))).))))))))........................................ ( -9.94 = -10.72 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:10 2006