Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,838,080 – 6,838,176 |
Length | 96 |
Max. P | 0.500000 |
Location | 6,838,080 – 6,838,176 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -20.54 |
Energy contribution | -21.48 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.09 |
Mean z-score | -1.47 |
Structure conservation index | 0.69 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6838080 96 - 27905053 CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGGGGGAAACGGAGAGAGGAA ......(((((((((............((.....((.((((((((((.((((.(....))))))))))))))).)).))(....)))).)))))). ( -34.40) >DroSec_CAF1 350 95 - 1 CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGG-GGAAACGGAGAGAGGAA .((...(((.(((((((((......)))......((.((((((((((.((((.(....))))))))))))))).)).)-))))).)))....)).. ( -34.00) >DroSim_CAF1 346 95 - 1 CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGG-GGAAACGGAGAGAGGAA .((...(((.(((((((((......)))......((.((((((((((.((((.(....))))))))))))))).)).)-))))).)))....)).. ( -34.00) >DroAna_CAF1 341 76 - 1 CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAAAACGCCACGAUGUUUACGCUCAAGAUGAG-GGUGCAGUGG------------------- ...((((((((.((.(((..((......))......(((((......)))))....))).)).)))-))))).....------------------- ( -16.40) >consensus CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGG_GGAAACGGAGAGAGGAA (((((.....((((.......))))............((((((((((.((((.......))))))))))))))))))).................. (-20.54 = -21.48 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006