Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,835,985 – 6,836,243 |
Length | 258 |
Max. P | 0.999138 |
Location | 6,835,985 – 6,836,098 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 98.59 |
Mean single sequence MFE | -25.85 |
Consensus MFE | -24.21 |
Energy contribution | -23.96 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -2.32 |
Structure conservation index | 0.94 |
SVM decision value | 3.39 |
SVM RNA-class probability | 0.999138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6835985 113 - 27905053 CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAGGCCAG--CAAAACAACAAAGCAAGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((.((.......)--)..)))))))))..))).. ( -25.92) >DroSec_CAF1 94860 113 - 1 CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAAGCCAG--CAAAACAACAAAGCAAGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((.((.......)--)..)))))))))..))).. ( -25.92) >DroSim_CAF1 101218 113 - 1 CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAGGCCAG--CAAAACAACAAAGCAAGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((.((.......)--)..)))))))))..))).. ( -25.92) >DroEre_CAF1 80118 113 - 1 CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAGGCCAG--CAAAACAACAAAGCAGGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((.((.......)--)..)))))))))..))).. ( -25.62) >DroYak_CAF1 93693 115 - 1 CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAGGCCAGCGCAAAACAACAAAGCAGGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((.(((......).))..)))))))))..))).. ( -26.12) >DroAna_CAF1 50950 113 - 1 CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAGGCCAG--CAAAACAACAAAGCAGGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((.((.......)--)..)))))))))..))).. ( -25.62) >consensus CCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUUGUUAGCCAGGCCAG__CAAAACAACAAAGCAAGCG (((((((((.............)))))))))...((((((......))))))....((((....))))(((...(((((((((................)))))))))..))).. (-24.21 = -23.96 + -0.25)
Location | 6,836,018 – 6,836,136 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.43 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -22.70 |
Energy contribution | -22.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.94 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6836018 118 - 27905053 CACUUCACUUUGUCCACACAG--AGCACACCCGUAGCGGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU .......((((((....))))--)).....(((...))).(((((((((.............)))))))))...((((((......))))))....((((....))))............ ( -22.92) >DroSec_CAF1 94893 118 - 1 CACUUCACUUUGUCCACACAG--AGCACACCCGUAGCGGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU .......((((((....))))--)).....(((...))).(((((((((.............)))))))))...((((((......))))))....((((....))))............ ( -22.92) >DroSim_CAF1 101251 118 - 1 CACUUCACUUUGUCCACACAG--AGCACACCCGUAGCGGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU .......((((((....))))--)).....(((...))).(((((((((.............)))))))))...((((((......))))))....((((....))))............ ( -22.92) >DroEre_CAF1 80151 118 - 1 CACUUCACUUUGUCCACACAG--AGCACACCCGUAGCAGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU .......((((((....))))--)).........(((((((((((((((.............)))))))))...((((((......))))))....((((....))))......)))))) ( -23.62) >DroYak_CAF1 93728 120 - 1 CACUUCACUUUGUCCACACAGAGAGCACACCCGUAGCGGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU ...(((.((((((....)))))).((((....)).)))))(((((((((.............)))))))))...((((((......))))))....((((....))))............ ( -24.22) >DroAna_CAF1 50983 118 - 1 CACUUUGCUUUGUCCACACAG--AGCACACCCGUAGCAGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU .....((((((((....))))--)))).......(((((((((((((((.............)))))))))...((((((......))))))....((((....))))......)))))) ( -28.42) >consensus CACUUCACUUUGUCCACACAG__AGCACACCCGUAGCGGACCACAUGAUAAAUAAUCGAUAAAUUAUGUGGACACAUGUUUAAUCUAGCAUGAAAUGGAAUCAUUUCCCUUCAAUUUGUU ..........((((((((......((((....)).))........((((.....))))........))))))))((((((......))))))....((((....))))............ (-22.70 = -22.70 + -0.00)
Location | 6,836,136 – 6,836,243 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -40.06 |
Consensus MFE | -28.62 |
Energy contribution | -28.34 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.37 |
Structure conservation index | 0.71 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6836136 107 + 27905053 AAGCCAGAGGCCCCAGGCCACGGACAUGGCUCCUCGUUUGCGGAUGGAA---GUGGGCGGGGA-AAGUGGACGGAGAAAGUGGGGUGG-UCAAAGUGGGCGUAGUG-----GGCGAA--- ..(((....((((((..(..((..(((...((((((((..(........---)..))))))))-..)))..))..)....)))))).(-((......)))......-----)))...--- ( -41.70) >DroSec_CAF1 95011 108 + 1 AAGCCAGAGGCCCCAGGCCACGGACAUGGCUCCUCGUUUGCGGCUGGAA---GUGGGCGGGGA-AAGUGGACGGAGAAAGUGGGGUUGGGCGGAGUGGGAGGAGGG-----AGCGAA--- ..(((...(((((((..(..((..(((...((((((((..(........---)..))))))))-..)))..))..)....))))))).)))...............-----......--- ( -41.60) >DroSim_CAF1 101369 112 + 1 AAGCCAGAGGCCCCAGGCCACGGACAUGGCUCCUCGUUUGCGGCUGGAA---GUGGGCGGGGA-AAGUGGACGGAGAAAGUGGGGUUU-GCUGAGUGGGCGGAGGGGCGAGGGCGAA--- ..(((....(((((.(.(((((..(((...((((((((..(........---)..))))))))-..)))..)......((..(...).-.))..)))).)...)))))...)))...--- ( -46.70) >DroEre_CAF1 80269 97 + 1 AAGCCAGAGGCCCCAGGCCACGGACAUGGCUCCUCGUUUGCGGCUGGUA---GUGGAUGGGGA-AAGCGGACGGAGAAAGUGGG-----GCAGAGUGG--------------GCGAAUGA ..(((....((((((.((((......))))((((((((..(........---)..))))))))-................))))-----))......)--------------))...... ( -37.60) >DroYak_CAF1 93848 97 + 1 AAGCCAGAGGCCCCAGGCCACGGACAUGGCUCCUCGUUUGCGGCUGGAAUGGGGGGAUGGGGAAAAGUGGACGGAGAAAGUGG------GCAUAGUGG--------------GCGCA--- ..(((....(((((...(..((..(((...(((((((((.(...........).)))))))))...)))..))..)...).))------))......)--------------))...--- ( -32.70) >consensus AAGCCAGAGGCCCCAGGCCACGGACAUGGCUCCUCGUUUGCGGCUGGAA___GUGGGCGGGGA_AAGUGGACGGAGAAAGUGGGGU___GCAGAGUGGG_G_AG_G______GCGAA___ ...(((..((((...)))).((..(((...((((((((..(...........)..))))))))...)))..)).......)))..................................... (-28.62 = -28.34 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006