Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,835,659 – 6,835,752 |
Length | 93 |
Max. P | 0.835488 |
Location | 6,835,659 – 6,835,752 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -19.65 |
Energy contribution | -20.27 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.12 |
Mean z-score | -2.92 |
Structure conservation index | 0.66 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6835659 93 - 27905053 ACUUGGCCAACUUUGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUGCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU ...((((((....)))).))((((.....(((((((...))))))))))).(((---------------(((....))))))((.(((((((..---....)))))))---------)). ( -32.70) >DroSec_CAF1 94534 92 - 1 ACUUGGCCAACU-UGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUCCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU ...(((((....-.))).))((((.....(((((((...))))))))))).(((---------------(........))))((.(((((((..---....)))))))---------)). ( -27.00) >DroSim_CAF1 100892 92 - 1 ACUUGGCCAACU-UGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUCCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU ...(((((....-.))).))((((.....(((((((...))))))))))).(((---------------(........))))((.(((((((..---....)))))))---------)). ( -27.00) >DroEre_CAF1 79783 95 - 1 ACUUGGCCAACU-GGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUCCGGCGCUGAAUGAUUCAUCAUUCAUCAUUU---------GCU ..(((((..(((-(....))))))))).((((((((...))))))))....(((---------------(........))))(.(((((((....))))))).)....---------... ( -26.50) >DroYak_CAF1 93336 101 - 1 ACUUGGCCAACU-UGGCACAGUGUCAAGUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUUCGACGCUGAAUGAUUC---AUUCAUCAUUUGGCUAUUCGGCU ....((((...(-((((.....)))))(((((((((...)))))))))...(((---------------(........))))((..((((((..---....))))))..)).....)))) ( -36.70) >DroAna_CAF1 50630 104 - 1 GCUUGCCCAA----GGCACAGUGACAAGUGGCUGAGUCUCCAGACAGAAUGGUUGUGGCCAGGACAUCGGGAUCUUUCCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU .((((.(((.----.((.((((.(....).)))).(((....)))......))..))).))))...((((((...)))))).((.(((((((..---....)))))))---------)). ( -28.50) >consensus ACUUGGCCAACU_UGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC_______________GCAUCUCUCCGACGCUGAAUGAUUC___AUUCAUCAUUU_________GCU .....(((......))).(((((((...((((((((...))))))))......................(........))))))))((((((.........))))))............. (-19.65 = -20.27 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:06 2006