Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,834,900 – 6,835,001 |
Length | 101 |
Max. P | 0.939611 |
Location | 6,834,900 – 6,835,001 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.87 |
Mean single sequence MFE | -27.74 |
Consensus MFE | -5.88 |
Energy contribution | -6.68 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.21 |
Mean z-score | -2.08 |
Structure conservation index | 0.21 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6834900 101 - 27905053 ACGUAGGGAAAACUACGACCGAGUUGUCCUAAUUCCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACGUUGCUUUGUCACCGACACAAAGG--------CACAAACAACGACA .(((((......))))).....(((((((........((((--------(....))))).....))))-)--))((((.(((((..((........))--------.))))))))).... ( -29.92) >DroSim_CAF1 100232 101 - 1 ACGUAGGGAAAACUACGACCGAGUUGUCCUAAUUCCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACGUUGCUUUGUCACCGACACAAAAG--------CACAAACAACGACA .(((((......)))))..((.(((((((........((((--------(....))))).....))))-)--))((.((((((((...))))...)))--------)))......))... ( -27.82) >DroEre_CAF1 79027 101 - 1 ACGUAGUGGAAACUACGACCGAGUUGUCCUAAUUUCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACGUUGCUUUGUCACCAACACAAAAG--------CACAAACAACGACA .((((((....))))))..((.(((((((........((((--------(....))))).....))))-)--))((.(((((............))))--------)))......))... ( -29.12) >DroYak_CAF1 92565 101 - 1 ACGUCGCAGAAACUACGACCGAGUUGUGCUAAUUCCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACAUGGCUUUGUCACCGACACAAAAG--------CACCAACAACGACA ..((((....((((.(....)))))(((((.......((((--------(....)))))......((.-(--(((......)))).))........))--------)))......)))). ( -25.50) >DroAna_CAF1 49971 120 - 1 AUGGUCUCCAAACUAUGCCAAAGUUACCCCAAUCCCAAUUACUCCCGGGCAUGGCUCCUCAUUCCGUCUGUAGUUUGUCUUUGUCUUCCUCACAAAAGGAUGAAAACACAAACAACGACA ..((........(((((((..(((................)))....))))))).........))(((.((.((((((.(((.((.((((......)))).))))).)))))).))))). ( -26.32) >consensus ACGUAGGGAAAACUACGACCGAGUUGUCCUAAUUCCAUUCG________CAUAGGCGAACAUCUGGGC_G__ACGUUGCUUUGUCACCGACACAAAAG________CACAAACAACGACA .(((((......))))).....(((((........................((((......))))..............(((((.......)))))...............))))).... ( -5.88 = -6.68 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:05 2006