Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 973,757 – 973,848 |
Length | 91 |
Max. P | 0.894859 |
Location | 973,757 – 973,848 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 71.12 |
Mean single sequence MFE | -24.91 |
Consensus MFE | -6.99 |
Energy contribution | -9.12 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.44 |
Mean z-score | -2.41 |
Structure conservation index | 0.28 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 973757 91 + 27905053 GCUGAGCUGCAGCUUCAGCACAACAGUUGCUCCUUUCAAUUUCCCCC---CUC---UU--GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGCCUCGGU (((((((.(((((...(((.((..(((((.......)))))...(((---(..---..--)))).............)))))...))))).).)))))) ( -27.80) >DroVir_CAF1 30170 84 + 1 GUUGA---GUAGCA----UCUUGCAGUUGCUCUUUUCAAUUUGCAGCUACCUCU--UUUGAGGGCUUUAUUUUUUAACGACUUGUACU------UGAGU .(..(---(((.((----..(((.((((((............)))))).((((.--...))))..............)))..))))))------..).. ( -19.60) >DroSec_CAF1 20141 91 + 1 GCCGAGCUGCAGCUUCAGCACAGCAGUUGCUCCUUUCAAUUUCCCCC---CUC---UU--GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGACUCGGU (((((((.(((((...(((..(((....))).............(((---(..---..--))))...............)))...))))).).)))))) ( -31.60) >DroSim_CAF1 21257 91 + 1 GCCGAGCUGCAGCUUCAGCACAGCAGUUGCUCCUUUCAAUUUCCCCC---CUC---UU--GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGACUCGGU (((((((.(((((...(((..(((....))).............(((---(..---..--))))...............)))...))))).).)))))) ( -31.60) >DroEre_CAF1 20956 89 + 1 GCCGAGCUGCAGCUUCAGCAGAACAGUUGCUACCUUCAAUUUCCCCC---CAC---UU--GGUGCAUU--UUUUUAAUGGCUCCUGCUCCUUCCUCUGC ((.(((((((((((((....))..))))))((((.............---...---..--))))....--........)))))..))............ ( -16.07) >DroAna_CAF1 18146 86 + 1 --------GCAAUUGGAGCCGAGCACUUGCUCUUUUCAAUUUGCUGC---CUCCUUUG--AGGAUUUUAUUUUUUAAUGGCGAGCGCUAGUGCCUUGGU --------.........((((((((((.((............(((((---(....(((--((((......))))))).))).))))).)))).)))))) ( -22.80) >consensus GCCGAGCUGCAGCUUCAGCACAGCAGUUGCUCCUUUCAAUUUCCCCC___CUC___UU__GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGCCUCGGU ((((((..((((((..........))))))..............................((((((............)))))).........)))))) ( -6.99 = -9.12 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:40 2006