Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 225,046 – 225,149 |
Length | 103 |
Max. P | 0.500000 |
Location | 225,046 – 225,149 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -20.30 |
Energy contribution | -20.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.69 |
Structure conservation index | 0.60 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 225046 103 + 27905053 UAUGGAGCACUGGGUGGCCAUACUGGCCAUGCAAGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAGG-AAAAAAAAUUUCAUUGCCGGUAUAAGUCGCGUUUA ...(((((((((.((((((.....)))))).)).....)))))))(((((.....(((..((.....(-(((.....))))...)))))..)))))........ ( -31.90) >DroSec_CAF1 19301 104 + 1 UAUGCAGCACUGGGUGGCCAUACUGGCCAUGCAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAGGGGAAAAAUAUCUCAUUACCGGGAUAAGUCGCGUUUA ...(((((..((.((((((.....)))))).))(((((((..........))))))))))))((((.(.((....((((((......))))))..)).).)))) ( -39.60) >DroSim_CAF1 18959 103 + 1 UAUGCAGCACUGGGUGGCCAUACUGGCCAUGCAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAGG-GAAAAAUAUCUCAUUACCGGGAUAAGUCGCGUUUA ...(((((..((.((((((.....)))))).))(((((((..........))))))))))))....(.-((....((((((......))))))..)).)..... ( -37.80) >DroEre_CAF1 22457 102 + 1 UAUGGAGCACUGGGUGGCCAUACUGGCCAUGUAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAAG-GG-ACAAAUCUCAUUAUCGCGGCACGUCACGAUUA ..((((((((.((((((((.....))))))......)))))))))).......((((.((.....)).-))-))..........((((.((....)).)))).. ( -35.40) >DroYak_CAF1 39406 101 + 1 UAUGGAGCACCGGGUGGCCAUACUGGCCAUGCAGUGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAAA-G--AAAUACCUCAUUAUCGCCACACGUCGCGAGUA ..((((((((.((((((((.....))))))......))))))))))..((((((...(((.((....)-)--.)))...))))))((((........))))... ( -30.70) >DroAna_CAF1 17810 101 + 1 UGUGCAGCACCGGGUGUCCGUACUGACCAUGUAGGGCGGUGCUCCACUUGAUGGUUCUUUGCUGGAAU-AA-GAACACCUUGUUUUGAUUACUAUUCG-GUGUG ......((((((((((((((((..((((((.((((..((....)).)))))))).))..))).)))..-.(-((((.....)))))......))))))-)))). ( -29.20) >consensus UAUGCAGCACUGGGUGGCCAUACUGGCCAUGCAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAAG_GA_AAAUAUCUCAUUACCGGGACAAGUCGCGUUUA .....((((..(.((((((.....)))))).).(((((((..........)))))))..))))......................................... (-20.30 = -20.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:33 2006