Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,830,173 – 6,830,265 |
Length | 92 |
Max. P | 0.595735 |
Location | 6,830,173 – 6,830,265 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -22.95 |
Energy contribution | -23.32 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.05 |
Structure conservation index | 0.72 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595735 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6830173 92 - 27905053 ---UUGGCCAGGCAUAGAAAAGG---------------------GCGCACA----CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA ---.((((.((((.....(((((---------------------.(((((.----..((((....((....)).))))))))).))))).....((........)))))).))))..... ( -31.50) >DroSec_CAF1 89302 92 - 1 ---UUGGCCGGGCAUAGAAAAGG---------------------GCUCACA----UACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA ---.((((..(((......((((---------------------((.(.((----(.((((....((....)).))))))).))))))).....((........)))))..))))..... ( -28.00) >DroSim_CAF1 95628 92 - 1 ---UUGGCCGGGCAUAGAAAAGG---------------------GCUCACA----UACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA ---.((((..(((......((((---------------------((.(.((----(.((((....((....)).))))))).))))))).....((........)))))..))))..... ( -28.00) >DroEre_CAF1 74300 95 - 1 CUGUUGGCCGGGCAUAGAAAAAG---------------------GCUCACA----CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA ((((.(((..(((......((((---------------------((.(.((----(.((((....((....)).))))))).))))))).....((........)))))..))))))).. ( -33.80) >DroYak_CAF1 87661 97 - 1 CUGUUGGCCGGGCAUAGAAAAAG---------------------GCUCACACA--CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA ((((.(((..(((......((((---------------------(((....((--(.((((....((....)).))))))).))))))).....((........)))))..))))))).. ( -32.00) >DroAna_CAF1 45473 120 - 1 ACUUUAUCCGGGCAUAGAAAAUCCCUAUAUGUAUGCAUAUGUAUGCUUAUAUGUAUUAGAGGUAUGCAGCUGCGCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCGCAGCA .......((((((((((.......))))......(((..(((((((((.((.....)).)))))))))..)))))))))(((((((.......(((........)))...)))))))... ( -37.60) >consensus ___UUGGCCGGGCAUAGAAAAGG_____________________GCUCACA____CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA ....((((..(((.............................................((((((...((((((.......))))))..))))))((........)))))..))))..... (-22.95 = -23.32 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:00 2006