Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,827,563 – 6,827,682 |
Length | 119 |
Max. P | 0.793768 |
Location | 6,827,563 – 6,827,682 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 98.32 |
Mean single sequence MFE | -37.30 |
Consensus MFE | -33.23 |
Energy contribution | -33.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.89 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6827563 119 - 27905053 AACCGAGCGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAGCGUGUGCGGCGGCCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA ......((....))...((((..((.(((((.(((.....(((....)))...........((((((((...))))))))..)))..))))....((......)).).))..))))... ( -37.70) >DroSec_CAF1 86640 119 - 1 AACCGAGAGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAACGUGUGCGGCGGGCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA .................((((..((.(((((.(((.....(((....)))...........((((((((...))))))))...))).))))....((......)).).))..))))... ( -35.80) >DroSim_CAF1 92513 119 - 1 AACCGAGCGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAGCGUGUGCGGCGGGCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA ......((....))...((((..((.(((((.(((.....(((....)))...........((((((((...))))))))...))).))))....((......)).).))..))))... ( -38.40) >consensus AACCGAGCGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAGCGUGUGCGGCGGGCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA .................((((..((.(((((.(((.....(((....)))...........((((((((...))))))))...))).))))....((......)).).))..))))... (-33.23 = -33.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:55 2006