Locus 2493

Sequence ID 3R_DroMel_CAF1
Location 6,826,080 – 6,826,187
Length 107
Max. P 0.559023
window4083

overview

Window 3

Location 6,826,080 – 6,826,187
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -29.68
Consensus MFE -23.56
Energy contribution -23.54
Covariance contribution -0.02
Combinations/Pair 1.18
Mean z-score -1.78
Structure conservation index 0.79
SVM decision value 0.05
SVM RNA-class probability 0.559023
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6826080 107 - 27905053
---UCCACCGAUUUUUGCUUCUUUUUCUUCGCAUUAGUAGCGGUGAGCAGGCCGAGGAAAAUCACUUGGCCGCCUAACUAAAUAAACGGCUUUCC--CAGCCACCCU----UUU--UG--
---..((((((((..(((............)))..)))..))))).((.(((((((........)))))))))..............((((....--.)))).....----...--..-- ( -29.40)
>DroSec_CAF1 85173 108 - 1
---UCCUCCAAUUUUUGCUUCUUUUUCUGCGCAUUAGUAGCGGUGAGCAGGCCGAGGAAAAUCACUUGGCCGCCUAACUAAAUAAACGGCUUUCC--CAGCCACCCU----UUU-GUG--
---..........................((((.....((.((((.((.(((((((........)))))))(((.............))).....--..))))))))----..)-)))-- ( -28.22)
>DroSim_CAF1 91088 108 - 1
---UCCUCCAAUUUUUGCUUCUUUUUCUGCGCAUUAGUAGCGGUGAGCAGGCCGAGGAAAAUCACUUGGCCGCCUAACUAAAUAAACGGCUUUCC--CAGCCACCCU----UUU-GUG--
---..........................((((.....((.((((.((.(((((((........)))))))(((.............))).....--..))))))))----..)-)))-- ( -28.22)
>DroEre_CAF1 70101 102 - 1
-------GCCAUUUUUGCUUCUUUUUCUGCGCAUUAGUAGCGGUGAGCAGGCCGAGGAAAAUCACUUGGCCGCCUAACUAAAUAAACGGCUUUCC--CAGCCACCCU----UUU--U---
-------((.(((..(((............)))..))).))((((.((.(((((((........)))))))(((.............))).....--..))))))..----...--.--- ( -30.62)
>DroYak_CAF1 83417 103 - 1
-------GCCAUUUUUGCUUCUUUUUCUGCGCAUUAGUAGCGGUGAGCAGGCCGAGGAAAAUCACUUGGUCGCCUAACUAAAUAAACGGCUUUCC--CAGCCACCCU----UUU--UG--
-------((.(((..(((............)))..))).))((((.((.(((((((........)))))))(((.............))).....--..))))))..----...--..-- ( -27.92)
>DroAna_CAF1 41635 118 - 1
CUAUCCU--CGUUUUUGGGGUUUCUCCUCCGCAUUAACAGCGGUAAGCAGGCCGUGGAAAAUCACUUGGCCGCCUAACUAAAUAAAAGAUUUUCCACCCGCCACCCGGCCGCUUUGCCUA
.......--.(((..((.((........)).))..)))((((((.....(((.((((((((((..((((........))))......))))))))))..))).....))))))....... ( -33.70)
>consensus
___UCCUCCCAUUUUUGCUUCUUUUUCUGCGCAUUAGUAGCGGUGAGCAGGCCGAGGAAAAUCACUUGGCCGCCUAACUAAAUAAACGGCUUUCC__CAGCCACCCU____UUU__UG__
..........(((..(((............)))..)))...((((.((.(((((((........)))))))(((.............))).........))))))............... (-23.56 = -23.54 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:46 2006