Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,824,876 – 6,824,994 |
Length | 118 |
Max. P | 0.591581 |
Location | 6,824,876 – 6,824,994 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.80 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -19.52 |
Energy contribution | -22.67 |
Covariance contribution | 3.14 |
Combinations/Pair | 1.18 |
Mean z-score | -2.41 |
Structure conservation index | 0.53 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6824876 118 + 27905053 AUUUCAGAGUUUUCCAGUGGGCGUAUGGGGGUGUAUGUGUGUGCUCAUGUAAGGGGGGGAUC-A-GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((..(((...(((....((((.(((((((((.((((.((((.(((....-.-.))).)))).))))))))))))).))))..))).)))..))).)))......... ( -40.30) >DroSec_CAF1 83948 117 + 1 AUUUCAGAGUUUUUCAGCGGUCGUAUGUGUAUGUGUGUGUGUGCUCAUGUAAGGGG--GAUCUA-GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ...............((((.(((..(((.(((((((((((((((.((((.(((.((--(.....-.))).)))..))))))))))))))))))).))).((...))....))).)))).. ( -41.20) >DroSim_CAF1 89867 111 + 1 AUUUCAGAGUUUUCCAGCGGUCGUAUG------UGUGUGUGUGCUCAUGUAAGGGG--GAUCUA-GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((...(((..((((------(((((((((((.((((.(((.((--(.....-.))).)))..)))))))))))))))))))....)))...))).)))......... ( -42.30) >DroEre_CAF1 68903 115 + 1 AUUUCAGAGUUUUCCACCGGGCGUGUGUG--UUUGUGUGAGUGCUCAUGUAGGGGG--GAUCUA-GCCCGCUUUUUAUGGGGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((...((..((.((((--(.((((((....((((((.(((.((--(.....-.))).)))..)))))).)))))).))))).))..))...))).)))......... ( -36.50) >DroYak_CAF1 82178 105 + 1 AUUUCAGAGUUUUUC----------UCUG--UAUGUGUGAGUGCUCAUGUUGGGGG--GAUCUA-GCUCGCUUUUUAUGGUGCACACACACAUAAAUAAGCAAAGGAUCUCGAGUGCUAA ....(((((.....)----------))))--((((((((.(((((((((..((.((--(.....-.))).))...))))).)))).))))))))....((((...(....)...)))).. ( -34.20) >DroAna_CAF1 40512 108 + 1 AAUU-----UUCCCGAGUGGCUGUAGGUGUAUGAGUGUGUGUG-----GUUGAAGG--GAUCUAUGCUCGUUUUUUAUGGGGCACACACACAUAAAUAACCAAAGGAUCUGGCGUGCUAA ....-----..((.((....((...(((.((((.(((((((((-----(((.....--))))....(((((.....))))))))))))).))))....)))...)).)).))........ ( -26.20) >consensus AUUUCAGAGUUUUCCAGCGGGCGUAUGUG__UGUGUGUGUGUGCUCAUGUAAGGGG__GAUCUA_GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((...((...(((.....((((((((((((((((((.((.(((..........))).))...))))).))))))))))))).))).))...))).)))......... (-19.52 = -22.67 + 3.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:45 2006