Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,823,926 – 6,824,044 |
Length | 118 |
Max. P | 0.500000 |
Location | 6,823,926 – 6,824,044 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 93.05 |
Mean single sequence MFE | -32.68 |
Consensus MFE | -30.70 |
Energy contribution | -31.06 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -1.05 |
Structure conservation index | 0.94 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6823926 118 + 27905053 CAAACACAUUAUUGGCUACAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAGAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCAGCCUGUCUGCCUCC ...((((......((((((((..((((......))))...))))))))((((.............))))...))))((((((((.(....(((......)))..).)))))))).... ( -34.52) >DroSec_CAF1 82990 118 + 1 CAAACACAUUAUUGGCUUCAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCGGCCUGUCUGCCUCC ...((((......((((.(((..((((......))))...))).))))((((.............))))...))))((((((((.(....(((......)))..).)))))))).... ( -31.32) >DroSim_CAF1 88918 118 + 1 CAAACACAUUAUUGACUGCAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCGGCCUGUCUGCCUCC ...((((........(..(((..((((......))))...)))..).(((((.............)))))..))))((((((((.(....(((......)))..).)))))))).... ( -30.52) >DroEre_CAF1 67938 118 + 1 CAAAAACAUUAUUGGCUACAGGGGUUUUAUUUGGAACAAAUUGUCGCUGAGGGUCCUCGAUUUUAUCUCAAAGUGUGCAGACAGACAAACGGCAUGGCAGCCCUGCCUGUCUGCCUCC .....(((((...(((.((((..(((((....)))))...)))).)))(((....))).............)))))((((((((.((...(((......))).)).)))))))).... ( -33.20) >DroYak_CAF1 81221 118 + 1 CUAACACAUUAUUGGGUACAAGCGUUUUAUUUGGCACUAAUUGUGGCCGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGACAGACAAACGGCAUGCCAGCCCUGCCUGUCUGCCUCC ...((((......((.((((((.(((......))).))...)))).))((((.............))))...))))((((((((.((...(((......))).)).)))))))).... ( -33.82) >consensus CAAACACAUUAUUGGCUACAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCGGCCUGUCUGCCUCC ...((((......((((((((..(((((....)))))...))))))))((((.............))))...))))((((((((.(....(((......)))..).)))))))).... (-30.70 = -31.06 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:44 2006