Locus 249

Sequence ID 3R_DroMel_CAF1
Location 971,265 – 971,370
Length 105
Max. P 0.954313
window438

overview

Window 8

Location 971,265 – 971,370
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 87.86
Mean single sequence MFE -23.53
Consensus MFE -19.60
Energy contribution -20.60
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.07
Structure conservation index 0.83
SVM decision value 1.44
SVM RNA-class probability 0.954313
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 971265 105 + 27905053
CACAUUGUACUAUAUGUUUUAUAUAUGUUUUAUAUGUUUCAUAUAUUUCAUGUGUGUUAUGGUUUCACCUUUAUGGCUACACAUGUUGCAUGUAACUGACUGUUC
.((((.(((.((((((...((((((.....))))))...))))))...((((((((((((((........))))))).))))))).)))))))............ ( -23.30)
>DroSec_CAF1 17656 94 + 1
---------CUAUAUGUACU--AUAUGUUUAAUAUGUUUUAUAUGUUUCAUGUGUGUUAUGGUUUCACCUUUAGGGCUACACAUGUUGCAUGUAACUGACUGUUC
---------.(((((..((.--....))...)))))..((((((((..((((((((((..((.....)).....))).)))))))..)))))))).......... ( -21.70)
>DroSim_CAF1 18704 103 + 1
UACAUUGUACUAUAUGUUGA--AUAUGUUUUAUAUGUUUUAUAUGUUUCAUGUGUGUUAUGGUUUCACCUUUAUGGCUACACAUGUUGCAUGUAACUGACUGUUC
.((((.(((..((((((...--))))))..))))))).((((((((..((((((((((((((........))))))).)))))))..)))))))).......... ( -25.60)
>consensus
_ACAUUGUACUAUAUGUUCU__AUAUGUUUUAUAUGUUUUAUAUGUUUCAUGUGUGUUAUGGUUUCACCUUUAUGGCUACACAUGUUGCAUGUAACUGACUGUUC
...........((((((.....)))))).......(((.(((((((..((((((((((((((........))))))).)))))))..)))))))...)))..... (-19.60 = -20.60 +   1.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:39 2006