Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,820,107 – 6,820,221 |
Length | 114 |
Max. P | 0.669335 |
Location | 6,820,107 – 6,820,221 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.88 |
Mean single sequence MFE | -23.91 |
Consensus MFE | -17.24 |
Energy contribution | -18.32 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.05 |
Mean z-score | -1.78 |
Structure conservation index | 0.72 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6820107 114 + 27905053 UAAUAAACGCCAAUG--CUGGCCACAAAUCCACAAAAGCGUCACCUGUGUCACCUCCGAUGCUCCAGGACGCCAGGAUGUCAGGAUGUCCACCAUUCCCAUCCUCUGUCCAUUCAC---- ........((((...--.))))...............(((((....(((((......))))).....)))))..(((((..((((((...........)))))).)))))......---- ( -27.90) >DroSec_CAF1 79237 116 + 1 UAAUAAACGCCAAUGCGCUGGCCACAAAUCCACAAAAGCGUCACCUGUGUCACCUCCGAUGCUCCAGGACGCCACGAUGCCAGGAUGUCCACCAUCCCCAUCCACCGUCCAUUCAC---- ........((((......))))..............((((((...............))))))...(((((....((((...(((((.....))))).))))...)))))......---- ( -26.86) >DroSim_CAF1 85137 114 + 1 UAAUAAACGCCAAUG--CUGGCCACAAAUCCACAAAAGCGUCACCUGUGUCACCUCCGAUGCUCCAGGACGCCACGAUGCCAGGAUGUCCACCAUCCCCAUCCACCGUCCGUUCAC---- ........((((...--.))))..............((((((...............))))))...(((((....((((...(((((.....))))).))))...)))))......---- ( -26.66) >DroEre_CAF1 64137 118 + 1 UAAUAAACGCCAAUG--CUGGCCACAAAUCCACAAAAGCGUCACCUGUGUCAGCUCCGAUGCUCCAGUAUGCCAGUGUACCAGGAUGCCCAUCGUCCCCAUCCACCAACCAUCUACCAAC ......((((..(((--((((...............((((((....((....))...)))))))))))))....))))....(((((...........)))))................. ( -21.56) >DroYak_CAF1 77419 98 + 1 UAAUAAACGCCAAUG--UUGGCCACAAAUCCACAAAAGCGUCACCUGUGUCACCUCCGAUGCUCC----------------AGGAUGCCCAUCAUCCCCAUCCGCCAUCCAUAUAC---- ............(((--.((((..............((((((...............))))))..----------------.(((((...........)))))))))..)))....---- ( -16.56) >consensus UAAUAAACGCCAAUG__CUGGCCACAAAUCCACAAAAGCGUCACCUGUGUCACCUCCGAUGCUCCAGGACGCCACGAUGCCAGGAUGUCCACCAUCCCCAUCCACCGUCCAUUCAC____ ........((((......))))...............(((((....(((((......))))).....)))))..........(((((...........)))))................. (-17.24 = -18.32 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:41 2006