| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,816,658 – 6,816,766 |
| Length | 108 |
| Max. P | 0.872925 |
| Location | 6,816,658 – 6,816,766 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 93.58 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -13.38 |
| Energy contribution | -13.38 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.872925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6816658 108 + 27905053 GCCAGAGUCGGAAAAAAUAAAACUAUCGCCGCAGGGCAAAAAACAUUCAACCAACUUCACACUGACUCCAUUUCCCA-------UUUCCCUGGACUGCACCACUACCACCAUAGC ((..(((((((.....(((....))).(((....)))........................)))))))......(((-------......)))...))................. ( -15.50) >DroSec_CAF1 75806 105 + 1 GCCAGAGUCAGAAAAAAUAAAACUAUCGCCGCAGGGCAAAAAACAUUCAACCAACUUCACACUGACUCCAUUUCCCA-------UUUCCCUGGACU---CCACUACCACCAUAGC ....(((((((.....(((....))).(((....)))........................)))))))......(((-------......)))...---................ ( -14.90) >DroSim_CAF1 80934 105 + 1 GCCAGAGUCGGAAAAAAUAAAACUAUCGCCGCAGGGCAAAAAACAUUCAACCAACUUCACACUGACUCCAUUUCCCA-------UUUCCCUGGACU---CCACUACCACCAUAGC ....(((((((.....(((....))).(((....)))........................)))))))......(((-------......)))...---................ ( -14.20) >DroEre_CAF1 60693 102 + 1 GCCAGAGUCGGAAAAA--AAAACUAUCGCCGCAGGGCAA-AAACAUUCAACCAACUUCACACCGACUCCAUUUCCCA-------UUUCCCUGGACU---CCACUACCACCAUAGC ....(((((((.....--.........(((....)))..-.....((.....)).......)))))))......(((-------......)))...---................ ( -14.90) >DroYak_CAF1 73863 112 + 1 GCCAGAGUCGGAAAAAAUAAAACUAUCGCCGCCGGGCAAAAAACAUUCAACCAACUUCACACCGACUCCAUUUCCCAUUUUCCAUUUCCCAGGACU---CCACUACCACCAUAGC ....(((((((.....(((....))).(((....)))........................)))))))............(((........)))..---................ ( -16.50) >consensus GCCAGAGUCGGAAAAAAUAAAACUAUCGCCGCAGGGCAAAAAACAUUCAACCAACUUCACACUGACUCCAUUUCCCA_______UUUCCCUGGACU___CCACUACCACCAUAGC ....(((((((.....(((....))).(((....)))........................))))))).......................((......)).............. (-13.38 = -13.38 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:33 2006