Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,815,514 – 6,815,622 |
Length | 108 |
Max. P | 0.887125 |
Location | 6,815,514 – 6,815,622 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.11 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -13.55 |
Energy contribution | -14.63 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.22 |
Mean z-score | -2.09 |
Structure conservation index | 0.42 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.887125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6815514 108 - 27905053 ----CAUUUCCUGCAAUUGUUAGAUUGUUAGAUAG--------GUAGAUAGUUUUGGGUGUGUGGCCAUCUAUAUCCAUCUGCGUUUGUCGGGAGAUUUGGAGCUAUUUGACAGCGGGAU ----....((((((((((....))))(((((((((--------((((((.(...((((((......))))))...).))))))....(((....)))......))))))))).)))))). ( -32.50) >DroSec_CAF1 74657 116 - 1 ----CAUUUCCUGCGAUUGUUAGAUUGUUAGAUAGUUGGAUAGGUAGAUAGUUUUGGGUGUGUGGCCAUCCAUAUCCAUCUGCGUUUGUCAGGAGAUUUUGAGCUAUUUGACAGCGGGAU ----....((((((((((....))))(((((((((((.((...((((((.(...((((((......))))))...).))))))....(((....))).)).))))))))))).)))))). ( -36.60) >DroEre_CAF1 59572 106 - 1 ----CAUUUCCUGCGAUUGUUAGAUAUUUAGAUAG--------GUAGAUCGUUAUG--UGUCUGCCCAUCUAUAUCCAUCUGCGUUUGUCAGGAGAUUUGGAGCUGUUCGACAGCGGGAU ----.(((((((((((.(((.((((...(((((.(--------((((((.......--.))))))).))))).....))))))).))).)))))))).....((((.....))))..... ( -34.80) >DroYak_CAF1 72697 110 - 1 UUUGCAUUUCCUGCGAUUGUUAGAUAGUUAGACAG--------GUAGAUAGUUUUG--UGUGGGGCCAUCUAUAUCCAUCUGCGUUUGUCAGGAGAUUUGGAGCUAUUCGACAGCGGGAU ........((((((...(((..((((((.......--------((((((.(((((.--...))))).)))))).(((((((.(........).)))..))))))))))..))))))))). ( -31.20) >DroAna_CAF1 31607 97 - 1 ----CAUUUCCUUCGCUUGAUCUACACCCACCU----------CCACAUAG-------UGGGUGCUCGUCUAAAUACGUCUGCAUUUGUCAGGCUAUUUGGUAUUAUAUGACAGCAGG-- ----.....(((..(((.(.((..(((((((..----------.......)-------)))))).....(((((((.((((((....).))))))))))))........)))))))))-- ( -24.40) >consensus ____CAUUUCCUGCGAUUGUUAGAUAGUUAGAUAG________GUAGAUAGUUUUG__UGUGUGGCCAUCUAUAUCCAUCUGCGUUUGUCAGGAGAUUUGGAGCUAUUUGACAGCGGGAU ........((((((.............................((((((.........((......)).........))))))...(((((((((........)).))))))))))))). (-13.55 = -14.63 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:29 2006