Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,813,868 – 6,813,985 |
Length | 117 |
Max. P | 0.998502 |
Location | 6,813,868 – 6,813,985 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -24.05 |
Energy contribution | -24.72 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.81 |
Structure conservation index | 0.89 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6813868 117 - 27905053 UACUUAGCCACCUCUUUCCC---CUAUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU .....((((...........---.......((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. ( -28.30) >DroSec_CAF1 73064 117 - 1 UACUUAGCCACCUCUUUCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAUUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU .....((((...........---.......((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. ( -28.30) >DroSim_CAF1 77719 117 - 1 UACUUAGCCACCUCUUUCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU .....((((...........---.......((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. ( -28.30) >DroEre_CAF1 57925 117 - 1 UACUUAACCACCAAUUCCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCA ....................---......(((((..((((((......((((((....)))))).((((((........))))))))))))....((....))..........))))).. ( -25.30) >DroYak_CAF1 71025 117 - 1 UACUUAACCACCAAUUCCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCA ....................---......(((((..((((((......((((((....)))))).((((((........))))))))))))....((....))..........))))).. ( -25.30) >DroAna_CAF1 29839 115 - 1 UACUUAGCCCC--GUUUCCCUUGCUUUUAGCCCG--CCUAACCAUUAAUCUAAACCAUUUUGGACACGGCACCAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCA-GGCUCU .....((((..--((.......))..((((((((--.....(((..........((.....))((((((((........)))))))))))...))).)))))...........-)))).. ( -25.80) >consensus UACUUAGCCACCUCUUUCCC___CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU .....((((.....................((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. (-24.05 = -24.72 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:26 2006