Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,812,655 – 6,812,750 |
Length | 95 |
Max. P | 0.947255 |
Location | 6,812,655 – 6,812,750 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -15.84 |
Consensus MFE | -14.27 |
Energy contribution | -14.33 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.42 |
Structure conservation index | 0.90 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6812655 95 + 27905053 ACC--ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA ...--...((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... ( -15.36) >DroSec_CAF1 70737 95 + 1 ACC--ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA ...--...((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... ( -15.36) >DroSim_CAF1 76467 95 + 1 ACC--ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA ...--...((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... ( -15.36) >DroAna_CAF1 28770 97 + 1 ACCACACAUAGCGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAGCACUUUUAUGUCUUCAUAUAACCCAAACGUUUUGAGUGCCGCCCACAAA ..(((.((.(((((.(((((....)))))))..(((((((...)))))))....((((....))))..........))).)).)))........... ( -17.30) >consensus ACC__ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA ........((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... (-14.27 = -14.33 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:25 2006