Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 967,411 – 967,547 |
Length | 136 |
Max. P | 0.543831 |
Location | 967,411 – 967,507 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 93.68 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -24.00 |
Energy contribution | -23.56 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.94 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.515972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 967411 96 + 27905053 CUCUAGCACAAAUCGGCUUUGAAAAGGGGCACACAAUAGUUGGAGAAGAAGUGCCCAGCGAAAGUUGUAUUGGGCUACAUCUUUUGUGGUUAAGUU (((((((........(((((.....)))))........)))))))((((.(((((((((....)).....))))).)).))))............. ( -25.59) >DroSec_CAF1 13712 93 + 1 CUCUAGCACAAAUCGGCUUUGAAAAGGGGCACACAAUAGUUGGAGA---AGUACCCAGCGAAAGUUGUAUUGGGCUACAUCAUUUGUAGUAAGGUU (((((((........(((((.....)))))........))))))).---...(((((((....))))......((((((.....))))))..))). ( -25.29) >DroSim_CAF1 14204 93 + 1 CUCUAGCACAAAUCGGCUUUGAAAAGGGGCUCACAAUAGUUGGAGA---AGUACCCAGCGAAAGUUGUAUUGGGCUACAUCAUUUGUAGUAAGGUU (((((((.......((((((.....)))))).......))))))).---...(((((((....))))......((((((.....))))))..))). ( -25.74) >consensus CUCUAGCACAAAUCGGCUUUGAAAAGGGGCACACAAUAGUUGGAGA___AGUACCCAGCGAAAGUUGUAUUGGGCUACAUCAUUUGUAGUAAGGUU (((((((........(((((.....)))))........)))))))..........((((....)))).(((..((((((.....))))))..))). (-24.00 = -23.56 + -0.44)
Location | 967,447 – 967,547 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 83.04 |
Mean single sequence MFE | -18.33 |
Consensus MFE | -15.34 |
Energy contribution | -14.90 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.34 |
Structure conservation index | 0.84 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 967447 100 + 27905053 UAGUUGGAGAAGAAGUGCCCAGCGAAAGUUGUAUUGGGCUACAUCUUUUGUGGUUAAGUUAAUAUGUCAUUAGAGAGAAAUUUCAAAAUUAUAAUAUAGU (((..(.((((((.(((((((((....)).....))))).)).)))))).)..)))................((((....))))................ ( -23.40) >DroSec_CAF1 13748 83 + 1 UAGUUGGAGA---AGUACCCAGCGAAAGUUGUAUUGGGCUACAUCAUUUGUAGUAAGGUUAAUAUGUCAUUAGAGAAAAGU-UCAAA------------- ..(((((...---.....)))))((..((((.(((..((((((.....))))))..)))))))...)).............-.....------------- ( -15.80) >DroSim_CAF1 14240 83 + 1 UAGUUGGAGA---AGUACCCAGCGAAAGUUGUAUUGGGCUACAUCAUUUGUAGUAAGGUUAAUAUGUCAUUAGAGAAAAGU-UCAAA------------- ..(((((...---.....)))))((..((((.(((..((((((.....))))))..)))))))...)).............-.....------------- ( -15.80) >consensus UAGUUGGAGA___AGUACCCAGCGAAAGUUGUAUUGGGCUACAUCAUUUGUAGUAAGGUUAAUAUGUCAUUAGAGAAAAGU_UCAAA_____________ ..(((((.(........))))))((..((((.(((..((((((.....))))))..)))))))...))................................ (-15.34 = -14.90 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006