Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,809,612 – 6,809,727 |
Length | 115 |
Max. P | 0.897954 |
Location | 6,809,612 – 6,809,727 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 98.78 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -24.34 |
Energy contribution | -24.10 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.61 |
Structure conservation index | 0.92 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6809612 115 + 27905053 AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA .(((....)))..........(((...(((((((((.......)))))(((((.....................))))).....(....).))))....)))............. ( -25.00) >DroSec_CAF1 67865 115 + 1 AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGUGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA .(((....)))..........(((...(((((((((.......))))))).(((..............((((....))))....(....))))))....)))............. ( -27.00) >DroSim_CAF1 73439 115 + 1 AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGUGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA .(((....)))..........(((...(((((((((.......))))))).(((..............((((....))))....(....))))))....)))............. ( -27.00) >DroEre_CAF1 53583 115 + 1 AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA .(((....)))..........(((...(((((((((.......)))))(((((.....................))))).....(....).))))....)))............. ( -25.00) >DroYak_CAF1 66547 115 + 1 AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAUUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAGCAAA .(((....)))..........(((...((((...((((......))))(((((.....................))))).....(....).))))....)))(((....)))... ( -28.10) >consensus AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA .(((....)))..........(((...((((...((((......))))(((((.....................))))).....(....).))))....)))............. (-24.34 = -24.10 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:24 2006