Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,809,412 – 6,809,525 |
Length | 113 |
Max. P | 0.625633 |
Location | 6,809,412 – 6,809,525 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.18 |
Mean single sequence MFE | -43.68 |
Consensus MFE | -28.43 |
Energy contribution | -28.63 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.33 |
Mean z-score | -2.25 |
Structure conservation index | 0.65 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6809412 113 - 27905053 UCCGGCAUUGAGAACCAGUCUCAGACGACG-------GGCUUGAUUGAAAAGCCCUCGAAAGACGCUGGGAAUUUGCUCGGCUAAUGCCGGGGCAUUUGGUUGGUGUUUCCCGGUGAUUC .......((((((.....)))))).(((.(-------(((((.......))))))))).....(((((((((....((((((....))))))(((((.....)))))))))))))).... ( -45.00) >DroSec_CAF1 67665 113 - 1 UCCGGCAUUGAGAACCAGUCUCAGACAGCG-------GGCUUGAUUGGAAAGCCCUCGAAAGACGCUGGGAAUUUGCUCGGCUAAUGCUGAGGCAUUUGGUUGGUUUUUCCCGGUGAUUC .((((....((((((((..(((...(((((-------(((((.......))))))((....)).)))).))...((((((((....))))).)))...)..)))))))).))))...... ( -45.30) >DroSim_CAF1 73239 113 - 1 UCCGGCAUUGAGAACCAGUCUCAGACAGCG-------GGCUUGAUUGGAAAGCCCUCGAAAGACGCUGGGAAUUUGCUCGGCUAAUGCUGAGGCAUUUGGUUGGUUUUUCCCGGUGAUUC .((((....((((((((..(((...(((((-------(((((.......))))))((....)).)))).))...((((((((....))))).)))...)..)))))))).))))...... ( -45.30) >DroEre_CAF1 53383 113 - 1 UCCGGCACUGAGCACGAGUCUCAGACGGCG-------GGCUUGAUUGAAAAGCCCUCGAAAGACGCUGGGUAUUUGCUCGGCUAAUGCUGAGGCAUUCGGUUGGUGUUUCCCGGUGAUUC .((((((((.(((.((((((((((.(((.(-------(((((.......)))))))))......(((((((....))))))).....)))))))..))))))))))....))))...... ( -44.90) >DroYak_CAF1 66324 119 - 1 UCCGGCAUCGAGC-CAAGUCUCAGACAGCGAGUCUCAGGCUUGAUUGAAAAGCCCUCGAAAGACGCUGGGUAUUUGCUCGGCUAAUGCCGAGGCAUUCGGUUGGUGUUUCCCGGUGAUUC ...(((.((((..-(((((((.((((.....)))).))))))).))))...))).((....))(((((((......((((((....))))))(((((.....)))))..))))))).... ( -46.40) >DroAna_CAF1 25594 104 - 1 UCUCCGAUUGAGACCCGGUCUGAGACU--C-------GGCUUGAUUGCAAAGCUCUCGAAAGUGCCGGGGAAUUUGUUCAGUUAAUGCCCGGGCAU-------GUGUUGCUUGGCAAUUU ((((.(((((.....))))).))))..--.-------.....((((((.((((...((...(((((.(((...(((......)))..))).)))))-------.))..)))).)))))). ( -35.20) >consensus UCCGGCAUUGAGAACCAGUCUCAGACAGCG_______GGCUUGAUUGAAAAGCCCUCGAAAGACGCUGGGAAUUUGCUCGGCUAAUGCCGAGGCAUUUGGUUGGUGUUUCCCGGUGAUUC .((((..((((((.....)))))).(((((.......(((((.......))))).((....)))))))......((((((((....))))).)))...............))))...... (-28.43 = -28.63 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:23 2006