Locus 2476

Sequence ID 3R_DroMel_CAF1
Location 6,807,625 – 6,807,743
Length 118
Max. P 0.515991
window4057

overview

Window 7

Location 6,807,625 – 6,807,743
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.31
Mean single sequence MFE -28.51
Consensus MFE -20.06
Energy contribution -19.70
Covariance contribution -0.36
Combinations/Pair 1.42
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value -0.03
SVM RNA-class probability 0.515991
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6807625 118 - 27905053
UUUCUGCGGUAUUUCCU-UUUUUAUAUCCCCUCUAAGGGGAACAAUAAUGUAGCUCUCUUAUGCAGAAAGCUGCUCACAAAUACUUUUGUAC-UAUAUGUUUCCCAAGAAGCUGCGAUGG
....((((((..(((..-........(((((.....)))))(((.....((((((.(((.....))).))))))..(((((....)))))..-....))).......))))))))).... ( -28.00)
>DroSec_CAF1 65893 118 - 1
UUUCUGCGGCAUUUCCU-UUUUUAUAUCCCCUCUAAGGGGAACAAUAUUGUAGCUCUAUUAUGCAGAAAGCUGCUCAGAAAUACUUAUGUAC-UAUGUGCUUCCCAAGAAGCUGCGAUGC
((((((((((.((((..-........(((((.....)))))...........((........)).)))))))))..)))))(((....))).-..((((((((....))))).))).... ( -29.50)
>DroSim_CAF1 71454 118 - 1
UUUCUGCGGCAUUUCCU-UUUUUAUAUCCCCUCUAAGGGGAACAAUAAUGUAGCUCUCUUAUGCAGAAAGCUGCUCACAAAUACUUAUGUAC-UAUGUGCUUCCCAAGAAGCUGCGAUGG
....((((((.......-........(((((.....)))))........((((((.(((.....))).)))))).((((..(((....))).-..))))...........)))))).... ( -30.70)
>DroEre_CAF1 51611 115 - 1
UUUCUGCGGCAUUUCCU-UUUUUAUAUCCCCUCUAAGGGGAACAAUAAUGUAGCUCUGUUAUGCAGAAAGCUGCUCACAAAUACUUAUGU----AUAUGCUUCCCAAGAAGCUGCGAUGG
....((((((.......-........(((((.....)))))........(((((((((.....))))..)))))...((.((((....))----)).))...........)))))).... ( -30.40)
>DroYak_CAF1 64482 118 - 1
UUUCUGCGGCAUUUCCU-UUUUUAUAUCCCCUCUAAGGGCAACAA-AACGUAGCUCUGUUAUGCAGAAAGCUGCUCACAAAUACUUAUGUACAUAUAUGCUUUUCAAGAAGCUGCGAUGG
....((((((....(((-(...............))))(((....-...(((((((((.....))))..))))).......(((....)))......)))..........)))))).... ( -24.26)
>DroAna_CAF1 23588 111 - 1
UUUCUGCGGCAUUUCCUCUUUUUAUAUCUCCGUUGAGGGGAGCCAUAAUACAGCAGUGUUCUGGACAAAGUCGUUCCUGAACACUUACUUGU-U-UAAG------GA-AAAGAGUAAAGA
(((((..(((.(..((((................))))..)))).(((.((((.(((((((.((((......).))).)))))))...))))-)-)).)------))-)).......... ( -28.19)
>consensus
UUUCUGCGGCAUUUCCU_UUUUUAUAUCCCCUCUAAGGGGAACAAUAAUGUAGCUCUGUUAUGCAGAAAGCUGCUCACAAAUACUUAUGUAC_UAUAUGCUUCCCAAGAAGCUGCGAUGG
....((((((................(((((.....)))))........((((((((.......)))..)))))....................................)))))).... (-20.06 = -19.70 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:20 2006